Detail information of BGIOSGA035259_circ_g.1


General Information
CircRNA Name BGIOSGA035259_circ_g.1
ID in PlantcircBase osi_circ_009015
Alias Chr11:18621670_18623411(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 13314947-13316684  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA035259
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA035259-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCACCTTCACTTGCACCGTCTTAGCACTTTATTTTGGTTCACTACTTAATGCTTTGAGACGAC
GAATTGGTGAAGAAGAGAGGGAATTGAAAAAAGCAGggtccaacaatttcatattagtgaattg
gagctatctttcacacaaggtcgatggaattatgagcagtggggtggatatgacccaatgtcga
ccaattat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCCAACAATTTCATATTAGTGAATTGGAGCTATCTTTCACACAAGGTCGATGGAATTATGAG
CAGTGGGGTGGATATGACCCAATGTCGACCAATTATGCAAAGCCTCCTGGTGTTGAGCTGTGGG
CAGCTTTTGACCTTCCTTTAGATGAGATTGATGCCACATGGAAGAACCTGACACACACACTCTC
AGGCCTGTTTTGTGCATCCATTAACTTTTTAGAATCATCCACTGCCTTTTCTGCTCCTCGTTGG
GGATTCAAATTGAATGAAGGGAATCTAAGATATGGTGCATTGCCTCGTGAAGCGGTGTGCACTG
AGAATCTCACACCTTGGTTGAAACTTCTTCCTTGTCGTGACAAAGCTGGGATAGCTTCTTTGCT
GTACAGGCCTTCAATATATAAAGGATATTACCATTCCCAAAAACTGAAATTGACATCATCTCAA
TCTTTTGGTATTATTATCGATCAGACATTGACAGTGGTTCTGCAGCCGGATACTTTTTGGGGTC
AGCAACTACATTCTACTGATGGACAACTGCAGCCCAGCTGGTCCATGAAAGATCTGTTTAACAG
GAAGTTATCAGGAAAATGCCGTGTCTCCAAATCGAGCAGAGTATTTTTAGAGATTGAGAACGAT
ATAGTTGACAAATCTGGAACTGAAGCTTCTTCGACTAATGAACTCTTTGTGCTGTCAACTGCCC
CAGACAGGGTGCTCAAGGAATTAAATAACATGGATGCCCAATCTTCTTCTCTATATGAATATGA
TGTTAGTAACTACAACAATGATAAGCCTTTGGATGTTGGCATAACCTGGAAACTTCCCCTCATA
TGGTCTTGCACCCCTGCACCGTATCATGCAAACAGATTTCTCATGGGTAGTGGAAATGAAAGAG
GGTCGATTGCTCTGTCATTTAGATCCACTAATTTGCATAAGCAGTTATTTGGAAGCTCAAATGA
TTGCTCAATAAAAGCTGTAGTTTTCCAAGTTGTTCCATGGTATGTTAAGGTTTATTATCACAGC
TTACAAATTTTCATTGATGGGAACAGTAAGGCTATTTCAGAAGTAGTTGAGAAGATTCATGTCA
CTCCTTCAGAAGACAAACATTTACCTGGTACTCTAGAGATGCTACTAAGATTACCTTGCAGTAT
GGAATCAGCTACCCTGTCGCTGGACTTTGACAAGGTTTGTTCTGCTACTTAAATTTACTTGTTT
CCCCTTTGTGTTTTATTTAGTGATATATAGAACTAAATGTTGACCTTGGTCTTATATTTACATG
AATGCATATTTCAGGGGTTTCTGCATATCGATGAATATCCTCCTGATGCTAATCAAGGATTTGA
CATCCCATCAGCTTTGGTAACATTTCCTGAGTTCAATTCTAGCCGAAGTTATCCTGAAGGTGAT
ACATTATTTGTGTCACCTTTGCTACAAACGTTCAAGGTATATCTTGTGACTTGACTAGTAGTAT
CAGAAGCAAAAGCAAAAAGACTACCATGTGAACTGAAATGACATGCTTCAATACTTACTGATTG
CGATATTGTTATAACTTGAAGGAAGATGGCGTGGTCAAGTCATATACAGAAGTATTGCTTGTTC
CCTTGACAACTCCTGATTTCAGCATGCCATACAATGTCATCACCTTCACTTGCACCGTCTTAGC
ACTTTATTTTGGTTCACTACTTAATGCTTTGAGACGACGAATTGGTGAAGAAGAGAGGGAATTG
AAAAAAGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021