Detail information of Os03g0625700_circ_g.1


General Information
CircRNA Name Os03g0625700_circ_g.1
ID in PlantcircBase osa_circ_020687
Alias NA
Organism Oryza sativa
Position chr3: 23802942-23806449  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0625700
Parent gene annotation Similar to Roothairless 1. (Os03t0625700-00)
Parent gene strand -
Alternative splicing Os03g0625700_circ_g.2 Os03g0625700_circ_g.3 Os03g0625700_circ_g.4
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0625700-00:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACATATAGTAAAGAAAACAAACCTCAAGTACTGCGCCGGATGAATACTTCAATACTCGGAGAA
AAGCTTTGGCTGCCTCACCTTTTGTCGATTGTTTAActcctgtggaattcgcaagcgatcaagc
aacttttctagttcttcaacgagtcctttgttatttacggactgcatctccaagccattgttgc
gtgattca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 812
Transcript exons: 23802942-23803043,23803441-23803545,23803715-23803832,23
805185-23805342,23805592-23805694,23805948-23806015,2380
6116-23806196,23806373-23806449
CTCCTGTGGAATTCGCAAGCGATCAAGCAACTTTTCTAGTTCTTCAACGAGTCCTTTGTTATTT
ACGGACTGCATCTCCAAGCCATTGTTGCGTGATTCAATCGATGCAATATCTTCTCTCATATGCC
TGAGCTTCATATTAAAAATGCGTAACCACTCATCCATATCATCTACGGTTGCACTAGCAGCATC
CAGACCCTGCAAAACCTCATCTATTAAAGGTTCACTCTGCAGTAGTTGATAGACATTGGCTGCT
TCCAAAGCAACAAGTTCCTGTTTCAATCTCTCAGAGAAAGCATCTGCTTCACCTATGCCCATGA
CATATGTGTCAAGAAGTGCCTCCATGTCTTCCTCTTCATCCTTTGCTTGGGACACAAGATCATT
TTCAACAGTTACAGTTACTTTCCTCTCAGTTTGAGTTGTGACAGATTTTTCTTGTCCATCTTGG
GTGCTCGATTGGTTGTCCAGAGTCACTGTATTTTCCTTGGCCCAGAGGGCTAGCTCCACAAAAT
CAATTCCAACGACTTTTGGAAGATAGCTAAGTATCTCTTTGCACATGGTCAGGATAGAAAAAAG
TAGGCGGTTTCTGTCATCAATGTTGCGCATTGTCCATTGTGGAGGGGCAACACTCTGACTTCTA
AGGTTATCAAACCCCAATACAAACGTGCAACCACTAGGATCATTCGAAATAACCTCAACCTTTG
TGAGATGTTTCAACTTGTAAAGCTTGGCTGGCTCAAGTACTGCGCCGGATGAATACTTCAATAC
TCGGAGAAAAGCTTTGGCTGCCTCACCTTTTGTCGATTGTTTAA

Genomic sequence CTCCTGTGGAATTCGCAAGCGATCAAGCAACTTTTCTAGTTCTTCAACGAGTCCTTTGTTATTT
ACGGACTGCATCTCCAAGCCATTGTTGCGTGATTCAATCTGCAAAATATGAACATGTATAGTTT
GAATACCAAGAATATAAGGAACTTTGGCAAAGAGTAAAAAGTAATACTACCTCCGTCCCATATT
ATAGCTATTTCTATTAAGGTTGAGTTGGTTGATATGAGAAAGTACGTGAAGAAAAAATTAAATG
AGAGATGGCTGTGATTGGTTGAGATGGAGAAGTAGGTGGAGAAGTAGCTACATTTGGGACAAAA
TAGCTATAATATGGGACTGAGGTAGTATGTATTATAAACACGTGAACTTGTGGGGAGAGGTGTT
CTTTAACTATCATTAGACATGTGTAACTATAGGCAAGAAGATATTTAATTTCTAGATGTTGGTA
AGAGAATTTCATAACTTCTACATAATATCAAACATGTAACCATAAGCATACCGATGCAATATCT
TCTCTCATATGCCTGAGCTTCATATTAAAAATGCGTAACCACTCATCCATATCATCTACGGTTG
CACTAGCAGCATCCAGACCCTGCAAAACCTGAAAATCCAATAATTGTATCAGTCAATGAAATAT
AGTTAGTGCCAAGAAAATACATAATCATCATTTGAAGAACTAAAGGTTAAATGCAGACAGCAGT
GCAATCAGATACCCATTACTGTTCATTGCCAAAAAAAAAGAGCCACATCAAGTATAAAGAATGC
AGTACCTCATCTATTAAAGGTTCACTCTGCAGTAGTTGATAGACATTGGCTGCTTCCAAAGCAA
CAAGTTCCTGTTTCAATCTCTCAGAGAAAGCATCTGCTTCACCTATGCCCATGACATATCTGCA
TTGTTTACAACAGTAAAATGTTTGCTGCCAAAGGATTGATGCTAAAAGGTTGAAGTGAGAGATA
ACGGAGTGGTGGACTGAAATTAATTTCAACATATGCAAGTATAAAGTATGAATTGTGTAAGAGT
AATTGCATTTGCACCACAGGTCGTCAAAGTTGTATGGTTTGTTTAACTAGGTCACTGAACTTTC
AAAATGTGTATATGACTAAACCTGTTTGATGCTTTAAGACTTGTCATGTTGACTTATCCCCTCA
AGGCAGCAATTGCACCTTGGTGACACATGATGACAGCAATGGCTACAATAAATTGTGATTCGCC
CATGAGTTTTGATCTTTCAAGATTTCCTCTCTCCATATAAAATACATATGAGAAGTAATGATTG
ATGCAATCAGGATATGGCTCATGTAAGTATTGTAACTTGTGATAGTGATTGTTGGAGTCAAGGA
CTCAAGGGCAATTAAGAAGGTTTAGCTAACCTTATCTCCAATCTAATGCAACTTTTACGATTAC
ATATGAGTCAGCATTCCATGTCATTAGTCATAGCCTGACTTGTAATGACCCAAAGTGATCCACT
TAACAGGTTTAGTGACCTAGATATAAACAAGTTAGTGACTTAGATAGTCTTGGGTCTTTGGTGC
AAACTAATCAACACTGTTCAATTATGTCTGGAATTCCTGGAACATTCTGTTTCGTTAAGAAAAA
TGGTATGTAGAGGCATTAATACTGTTAAAAATCTCTAATTCCGTTGAGTTCCACACTTTCTGGT
TGATACCGCCTATCCCGCTGGAATTTACTCTTCCGAGCATCTAGGTAAGCACTTGAACCAAGAA
GCACAGGAGAACCGCACGCTCCTGTATGGGAATACCTAGCCAAGCATGATTTCTAGTACTAATC
GTCTAATCCGATATTATATGATATGTTTGCATTTGTTTCTTTACATGTTCATTCACTTGGCCAC
AGCTAGATATTATTCTTTGCATCACACTATTTGGCTGTTTGCAAAGGTTATAACATGTATGACC
ACATATACATTTTTGAAATATTAATTATTATATACACCATAATGGTACACTGGGATAGTAAGGT
ACTGAAAATTTCCATACCAATATGCAAACCAGAATGACTATCAGATTGATCATGGTAAGTTTAG
TCTAAGTCACCTATTTGAACTAGCTGAACAAGCTAAGTGACTGAGTATGTGCAATTTACTCAGA
AGAGTAAATATGAAAGTAGAGTTAAAAGTTAAAACAATAGTAGAATAATAAAATGGTATAGTCA
CAATTAGTCCTTTGTAGTTTGTAATAACTAGACAATAAAGCGCACATACGGCATCACCCATACT
TACGTGTCAAGAAGTGCCTCCATGTCTTCCTCTTCATCCTTTGCTTGGGACACAAGATCATTTT
CAACAGTTACAGTTACTTTCCTCTCAGTTTGAGTTGTGACAGATTTTTCTTGTCCATCTTGGGT
GCTCGATTGGTTGTCCAGAGTCACTGTATTTTCCTGGAAAAGGTTAATTAGAAATTATCTAGCC
AACAATCCATTGAAGTCATTTAATATGCAAAAGGTACGCCAGCAGCTTGAAAAACTAAACTTAT
AACCCCCCCCCCTTCCAATTTGAAGTGTTTTAGGCCAAAATGGGTTGGATTTCAACTACCCACT
AATTAAACCAGTAAATTGGGAGGGAGTGGTCGAGTCAGGGGGAAGTCAAAAGACAGTTTTATGT
AATGAAAGGCAAAGTTATATATGCACCTTGGCCCAGAGGGCTAGCTCCACAAAATCAATTCCAA
CGACTTTTGGAAGATAGCTAAGTATCTCTTTGCACATGGTCAGGATAGAAAAAAGTAGGCGGTT
TCTGTAAAAAAAACGAATAGAAAAAATTTGTTAAGAGCCTGCAAATAAACATATCAATGTATTC
TCCCGCAACATGCAAACAGACTCATGCCAATGCAATGAATGACTTAACATAACGATAGAAGGTA
GATAGACACTACACATACACATAGAAGTATGTATACATTTGCAAAGTTTGTAAATTCATTAAGG
CATGTAAATTACATAAATAAAAGTAGCAGTTCAGTACTACAGAAATGTTTCTAGGCAATAACCT
GTCATCAATGTTGCGCATTGTCCATTGTGGAGGGGCAACACTCTGACTTCTAAGGTTATCAAAC
CCCTGCAATCCAGCCCATAACAACAAGTTAGAAGAGGATAAGCCATTAGCTTTTATTAACTATT
ACAGAAAGACAATGCAAATGAGGGATCAAAGTAAGTACCAATACAAACGTGCAACCACTAGGAT
CATTCGAAATAACCTCAACCTTTGTGAGATGTTTCAACTTGTAAAGCTTGGCTGGCTGAAACAA
AAGGAAGATATTATGTTTCTAAAGGGAGACTAAAGAGAACTGCAGAAAGTGGTAAGAAGAAAAA
TACAAAGTGTGATTTGTTTATTGAAGTAGTTGATAATGAAGGCAAGTTACAATAGTAAACATAA
GCTAGATGCAGATGCTCACATATAGTAAAGAAAACAAACCTCAAGTACTGCGCCGGATGAATAC
TTCAATACTCGGAGAAAAGCTTTGGCTGCCTCACCTTTTGTCGATTGTTTAA
Conservation Information
Conserved circRNAs osi_circ_013333
PMCS 0.206155694
Functional Information
Coding potential Y
Potential coding position 23805969-23806401(-)
Potential amino acid sequence MRNIDDRNRLLFSILTMCKEILSYLPKVVGIDFVELALWAKENTVTLDNQSSTQDGQEKSVTTQ
TERKVTVTVENDLVSQAKDEEEDMEALLDTYVMGIGEADAFSERLKQELVALEAANVYQLLQSE
PLIDEVLQGLDAASATVDDMDEWLRIFNMKLRHMREDIASIESRNNGLEMQSVNNKGLVEELEK
LLDRLRIPQELNNRQKVRQPKLFSEY*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017