Plant Circular RNA Database

Detail information of AT5G14850_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT5G14850_circ_g.1
					
						ID in PlantcircBase
						ath_circ_038315
					
						Alias
						NA
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 4802304-4804206  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							AT5G14850						
					
						Parent gene annotation
						
							Mannosyltransferase
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G14850_circ_g.2 AT5G14850_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-GC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G14850.1:6
AT5G14850.3:6
AT5G14850.4:5
AT5G14850.6:5
AT5G14850.2:6
AT5G14850.5:6

General Information
CircRNA Name	AT5G14850_circ_g.1
ID in PlantcircBase	ath_circ_038315
Alias	NA
Organism	Arabidpsis thaliana
Position	chr5: 4802304-4804206 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	AT5G14850
Parent gene annotation	Mannosyltransferase
Parent gene strand	-
Alternative splicing	AT5G14850_circ_g.2 AT5G14850_circ_g.3
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-GC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G14850.1:6 AT5G14850.3:6 AT5G14850.4:5 AT5G14850.6:5 AT5G14850.2:6 AT5G14850.5:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAGTTGCAACATTTCCTCCATATAAAGCATCAGAGAGTTTATACAAATAGAGATCACCAATAGC
TGAAAATATGGATTGCATAAGACGTGGGGCTTTGATctctttaaaggaatgttggatcatgaaa
tctctgagttttgtttcttctgatgcaaacaatacaatatgactaggcggctctgaccagtttc
tagctaac

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCTTTAAAGGAATGTTGGATCATGAAATCTCTGAGTTTTGTTTCTTCTGATGCAAACAATACA
ATATGACTAGGCGGCTCTGACCAGTTTCTAGCTAACTCTGATGCAAAACCTAAAGGGTTTACTA
AGAACTGATCCGACTCATCAAGTTCTCCCTTCTCTGCACTGTTTCAGAAGAAGAAGAAGAATCA
TTAAGAATCACATAGAAGCAAGAGCTGTGACTCGGGGTGTGATCCTTTACCTTGGAGTGCAGTC
GAGAAATTGCATTGGAATGTTACGATGGAGAGTGGAATAATAGGGAGTAGAATGGCACGGCATG
AGAAAGAGAATGCTCTTTACTCTGCCTTTGTATGCTTCATCCGATAAGTAATTCATCGCATCCT
CAGTTCCTCTCTGTTGGAAACAACAAAATTCCTTTTTAGCACAAATAGAGATAGAGAGTAAACT
CGGAAACTAGATAGAGCCCTCAAGGTACTGGTGTTTTTACCTGGTGGAATAAACTCATGTATAG
TGCCATTGGAATATTGGTAGCAAGCAAAAAATAGACTGAAAGTCTTAGTTTGGGAGACCACTTG
GTATGGTTCTGTCGAGGGACTTGCTTCTTTTTAGTGACTGATGATGATGATGATGAACCAGATA
CTTCCATTTGAGCAAATGCATACCCAGAGAATATCAAAGCTATGGGTAGCACAGGCAGGACAAA
CCTATCATTCATAATCTAAGTAGACGACATGGAAAACATAATAAATGATGAAAGGGTGTTCTTT
GCAAAGTTTTTCGATATTGAAAGTGTAAGAAAACGGGGTATGTTCTCCAATCATATTACCTGAA
TTCCTTATGGCCGAGTATGCTGTATATTGCTAAGACCCATAGAATAAGAGCTGAAAGCTTCTGA
TTCTTAGACTTGATAATTCCAGCAATGGAGAATGGTGTGAAAGTGAAAAGCATGACAAGAAATC
CCTGGGTGAAGTACCAGTGCCATGGGTGAGTTCCGTAATAGTCTCCACCAGACGAAAGGAAATT
AAACTTCAGAAAATTGAGAGGCACAATGACCCACGAGCCGTACATCAGACGGTCCAACAAACAG
GTGAAACCGAGGACCAAAGATCTAACACCAGAAGCAAGTTAGCGCAATGAAATCTTCAAAATCA
AACATTAAAACGAACATTCAAGAGTATAGCTTAGCTGCAGAGTTAAACTTACCCAATCGGGATC
ACCTCTAGAATGATGAATTTGACCTTATTAGGTGTCAAAAATAGCTCGAGCATCCCAACGTATA
ACCATATGACTGCACTAGTTGGCCTTATGGCACATGCTAGGGCCGCTATGACCAAACCCCACTT
CCGATTCACGGGATAGTCTATTGAAGAATCTCTAATACAAGGCCAGTAGTACAGCCCCATGATG
GTAAGAACAGTCTCCAAACAGTTTGAAAAGGTACGGTTCAAACAGAAGAAGATGAACCAGTTTG
CCATTTGACAAAAGAGCTACTAAAAAAGTTAAGGAAGCAATCCAGAATAAAATGCAAATACAAA
CCAAGAAAGATTAAGAGGAAACCACTAACAGACTTATCTAAGTATTTCATTGAAGCTCAGGATA
TCTAATCTAACACCCTTCCCGTTACATCGACCTATCATTGCGTAGGGAACCATCAAATGTAGTG
TAATGATGGGTTGGCTCCATTATTGTAGATAATGTTTGTTTTTTATTAACCAAGGTTTAATCTT
GGTTAAATTCATAGCCATATCATTCAAAAATGTAAAGCAATTAACTTAGTATGCTGCATAGAAA
GGATACAGACCAAGTTGCAACATTTCCTCCATATAAAGCATCAGAGAGTTTATACAAATAGAGA
TCACCAATAGCTGAAAATATGGATTGCATAAGACGTGGGGCTTTGAT
						
					

			
		

Sequences
Splice junction sequence	AAGTTGCAACATTTCCTCCATATAAAGCATCAGAGAGTTTATACAAATAGAGATCACCAATAGC TGAAAATATGGATTGCATAAGACGTGGGGCTTTGATctctttaaaggaatgttggatcatgaaa tctctgagttttgtttcttctgatgcaaacaatacaatatgactaggcggctctgaccagtttc tagctaac
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCTTTAAAGGAATGTTGGATCATGAAATCTCTGAGTTTTGTTTCTTCTGATGCAAACAATACA ATATGACTAGGCGGCTCTGACCAGTTTCTAGCTAACTCTGATGCAAAACCTAAAGGGTTTACTA AGAACTGATCCGACTCATCAAGTTCTCCCTTCTCTGCACTGTTTCAGAAGAAGAAGAAGAATCA TTAAGAATCACATAGAAGCAAGAGCTGTGACTCGGGGTGTGATCCTTTACCTTGGAGTGCAGTC GAGAAATTGCATTGGAATGTTACGATGGAGAGTGGAATAATAGGGAGTAGAATGGCACGGCATG AGAAAGAGAATGCTCTTTACTCTGCCTTTGTATGCTTCATCCGATAAGTAATTCATCGCATCCT CAGTTCCTCTCTGTTGGAAACAACAAAATTCCTTTTTAGCACAAATAGAGATAGAGAGTAAACT CGGAAACTAGATAGAGCCCTCAAGGTACTGGTGTTTTTACCTGGTGGAATAAACTCATGTATAG TGCCATTGGAATATTGGTAGCAAGCAAAAAATAGACTGAAAGTCTTAGTTTGGGAGACCACTTG GTATGGTTCTGTCGAGGGACTTGCTTCTTTTTAGTGACTGATGATGATGATGATGAACCAGATA CTTCCATTTGAGCAAATGCATACCCAGAGAATATCAAAGCTATGGGTAGCACAGGCAGGACAAA CCTATCATTCATAATCTAAGTAGACGACATGGAAAACATAATAAATGATGAAAGGGTGTTCTTT GCAAAGTTTTTCGATATTGAAAGTGTAAGAAAACGGGGTATGTTCTCCAATCATATTACCTGAA TTCCTTATGGCCGAGTATGCTGTATATTGCTAAGACCCATAGAATAAGAGCTGAAAGCTTCTGA TTCTTAGACTTGATAATTCCAGCAATGGAGAATGGTGTGAAAGTGAAAAGCATGACAAGAAATC CCTGGGTGAAGTACCAGTGCCATGGGTGAGTTCCGTAATAGTCTCCACCAGACGAAAGGAAATT AAACTTCAGAAAATTGAGAGGCACAATGACCCACGAGCCGTACATCAGACGGTCCAACAAACAG GTGAAACCGAGGACCAAAGATCTAACACCAGAAGCAAGTTAGCGCAATGAAATCTTCAAAATCA AACATTAAAACGAACATTCAAGAGTATAGCTTAGCTGCAGAGTTAAACTTACCCAATCGGGATC ACCTCTAGAATGATGAATTTGACCTTATTAGGTGTCAAAAATAGCTCGAGCATCCCAACGTATA ACCATATGACTGCACTAGTTGGCCTTATGGCACATGCTAGGGCCGCTATGACCAAACCCCACTT CCGATTCACGGGATAGTCTATTGAAGAATCTCTAATACAAGGCCAGTAGTACAGCCCCATGATG GTAAGAACAGTCTCCAAACAGTTTGAAAAGGTACGGTTCAAACAGAAGAAGATGAACCAGTTTG CCATTTGACAAAAGAGCTACTAAAAAAGTTAAGGAAGCAATCCAGAATAAAATGCAAATACAAA CCAAGAAAGATTAAGAGGAAACCACTAACAGACTTATCTAAGTATTTCATTGAAGCTCAGGATA TCTAATCTAACACCCTTCCCGTTACATCGACCTATCATTGCGTAGGGAACCATCAAATGTAGTG TAATGATGGGTTGGCTCCATTATTGTAGATAATGTTTGTTTTTTATTAACCAAGGTTTAATCTT GGTTAAATTCATAGCCATATCATTCAAAAATGTAAAGCAATTAACTTAGTATGCTGCATAGAAA GGATACAGACCAAGTTGCAACATTTCCTCCATATAAAGCATCAGAGAGTTTATACAAATAGAGA TCACCAATAGCTGAAAATATGGATTGCATAAGACGTGGGGCTTTGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.151586718

Conservation Information
Conserved circRNAs	NA
PMCS	0.151586718

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							4804189-4802306(-)
						
					

						Potential amino acid sequence
						
							MQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFSNCLETVLTIMGLYYWP
CIRDSSIDYPVNRKWGLVIAALACAIRPTSAVIWLYVGMLELFLTPNKVKFIILEVIPIGSLVL
GFTCLLDRLMYGSWVIVPLNFLKFNFLSSGGDYYGTHPWHWYFTQGFLVMLFTFTPFSIAGIIK
SKNQKLSALILWVLAIYSILGHKEFRFVLPVLPIALIFSGYAFAQMEVSGSSSSSSVTKKKQVP
RQNHTKWSPKLRLSVYFLLATNIPMALYMSLFHQRGTEDAMNYLSDEAYKGRVKSILFLMPCHS
TPYYSTLHRNIPMQFLDCTPSAEKGELDESDQFLVNPLGFASELARNWSEPPSHIVLFASEETK
LRDFMIQHSFKEIKAPRLMQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRT
FSNCLETVLTIMGLYYWPCIRDSSIDYPVNRKWGLVIAALACAIRPTSAVIWLYVGMLELFLTP
NKVKFIILEVIPIGSLVLGFTCLLDRLMYGSWVIVPLNFLKFNFLSSGGDYYGTHPWHWYFTQG
FLVMLFTFTPFSIAGIIKSKNQKLSALILWVLAIYSILGHKEFRFVLPVLPIALIFSGYAFAQM
EVSGSSSSSSVTKKKQVPRQNHTKWSPKLRLSVYFLLATNIPMALYMSLFHQRGTEDAMNYLSD
EAYKGRVKSILFLMPCHSTPYYSTLHRNIPMQFLDCTPSAEKGELDESDQFLVNPLGFASELAR
NWSEPPSHIVLFASEETKLRDFMIQHSFKEIKAPRLMQSIFSAIGDLYLYKLSDALYGGNVATW
SLFCQMANWFIFFCLNRTFSNCLETVLTIMGLYYWPCIRDSSIDYPVNRKWGLVIAALACAIRP
TSAVIWLYVGMLELFLTPNKVKFIILEVIPIGSLVLGFTCLLDRLMYGSWVIVPLNFLKFNFLS
SGGDYYGTHPWHWYFTQGFLVMLFTFTPFSIAGIIKSKNQKLSALILWVLAIYSILGHKEFRFV
LPVLPIALIFSGYAFAQMEVSGSSSSSSVTKKKQVPRQNHTKWSPKLRLSVYFLLATNIPMALY
MSLFHQRGTEDAMNYLSDEAYKGRVKSILFLMPCHSTPYYSTLHRNIPMQFLDCTPSAEKGELD
ESDQFLVNPLGFASELARNWSEPPSHIVLFASEETKLRDFMIQHSFKEIKAPRLMQSIFSAIGD
LYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFSNCLETVLTIMGLYYWPCIRDSSIDYP
VNRKWGLVIAALACAIRPTSAVIWLYVGMLELFLTPNKVKFIILEVIPIGSLVLGFTCLLDRLM
YGSWVIVPLNFLKFNFLSSGGDYYGTHPWHWYFTQGFLVMLFTFTPFSIAGIIKSKNQKLSALI
LWVLAIYSILGHKEFRFVLPVLPIALIFSGYAFAQMEVSGSSSSSSVTKKKQVPRQNHTKWSPK
LRLSVYFLLATNIPMALYMSLFHQRGTEDAMNYLSDEAYKGRVKSILFLMPCHSTPYYSTLHRN
IPMQFLDCTPSAEKGELDESDQFLVNPLGFASELARNWSEPPSHIVLFASEETKLRDFMIQHSF
KE(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	4804189-4802306(-)
Potential amino acid sequence	MQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFSNCLETVLTIMGLYYWP CIRDSSIDYPVNRKWGLVIAALACAIRPTSAVIWLYVGMLELFLTPNKVKFIILEVIPIGSLVL GFTCLLDRLMYGSWVIVPLNFLKFNFLSSGGDYYGTHPWHWYFTQGFLVMLFTFTPFSIAGIIK SKNQKLSALILWVLAIYSILGHKEFRFVLPVLPIALIFSGYAFAQMEVSGSSSSSSVTKKKQVP RQNHTKWSPKLRLSVYFLLATNIPMALYMSLFHQRGTEDAMNYLSDEAYKGRVKSILFLMPCHS TPYYSTLHRNIPMQFLDCTPSAEKGELDESDQFLVNPLGFASELARNWSEPPSHIVLFASEETK LRDFMIQHSFKEIKAPRLMQSIFSAIGDLYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRT FSNCLETVLTIMGLYYWPCIRDSSIDYPVNRKWGLVIAALACAIRPTSAVIWLYVGMLELFLTP NKVKFIILEVIPIGSLVLGFTCLLDRLMYGSWVIVPLNFLKFNFLSSGGDYYGTHPWHWYFTQG FLVMLFTFTPFSIAGIIKSKNQKLSALILWVLAIYSILGHKEFRFVLPVLPIALIFSGYAFAQM EVSGSSSSSSVTKKKQVPRQNHTKWSPKLRLSVYFLLATNIPMALYMSLFHQRGTEDAMNYLSD EAYKGRVKSILFLMPCHSTPYYSTLHRNIPMQFLDCTPSAEKGELDESDQFLVNPLGFASELAR NWSEPPSHIVLFASEETKLRDFMIQHSFKEIKAPRLMQSIFSAIGDLYLYKLSDALYGGNVATW SLFCQMANWFIFFCLNRTFSNCLETVLTIMGLYYWPCIRDSSIDYPVNRKWGLVIAALACAIRP TSAVIWLYVGMLELFLTPNKVKFIILEVIPIGSLVLGFTCLLDRLMYGSWVIVPLNFLKFNFLS SGGDYYGTHPWHWYFTQGFLVMLFTFTPFSIAGIIKSKNQKLSALILWVLAIYSILGHKEFRFV LPVLPIALIFSGYAFAQMEVSGSSSSSSVTKKKQVPRQNHTKWSPKLRLSVYFLLATNIPMALY MSLFHQRGTEDAMNYLSDEAYKGRVKSILFLMPCHSTPYYSTLHRNIPMQFLDCTPSAEKGELD ESDQFLVNPLGFASELARNWSEPPSHIVLFASEETKLRDFMIQHSFKEIKAPRLMQSIFSAIGD LYLYKLSDALYGGNVATWSLFCQMANWFIFFCLNRTFSNCLETVLTIMGLYYWPCIRDSSIDYP VNRKWGLVIAALACAIRPTSAVIWLYVGMLELFLTPNKVKFIILEVIPIGSLVLGFTCLLDRLM YGSWVIVPLNFLKFNFLSSGGDYYGTHPWHWYFTQGFLVMLFTFTPFSIAGIIKSKNQKLSALI LWVLAIYSILGHKEFRFVLPVLPIALIFSGYAFAQMEVSGSSSSSSVTKKKQVPRQNHTKWSPK LRLSVYFLLATNIPMALYMSLFHQRGTEDAMNYLSDEAYKGRVKSILFLMPCHSTPYYSTLHRN IPMQFLDCTPSAEKGELDESDQFLVNPLGFASELARNWSEPPSHIVLFASEETKLRDFMIQHSF KE(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of AT5G14850_circ_g.1

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