Plant Circular RNA Database

Detail information of Os02g0633100_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0633100_circ_g.2
					
						ID in PlantcircBase
						osa_circ_015708
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 25384061-25385408  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os02g0633100						
					
						Parent gene annotation
						
							Hypothetical conserved gene. (Os02t0633100-01);B-block binding s
ubunit of TFIIIC domain containing protein. (Os02t0633100-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0633100-02:3

General Information
CircRNA Name	Os02g0633100_circ_g.2
ID in PlantcircBase	osa_circ_015708
Alias	NA
Organism	Oryza sativa
Position	chr2: 25384061-25385408 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os02g0633100
Parent gene annotation	Hypothetical conserved gene. (Os02t0633100-01);B-block binding s ubunit of TFIIIC domain containing protein. (Os02t0633100-02)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0633100-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAGAGGTTGATCCTGAATTAACTTTTCGCCGTTTTCTTGCAGCAGGGACGGTGGGCTGTCCATG
AAGCTGTCTATTCTGAGAGGACGATACACAGAGCACcatgaaatttttctctctgagaaaggaa
aaggcagtaaaaatttcagtctctgaataaagctggagggttgctgctaacgaagcttgcactt
ctggtcct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1173
Transcript exons: 25384061-25384405,25384480-25384942,25385044-25385408
CATGAAATTTTTCTCTCTGAGAAAGGAAAAGGCAGTAAAAATTTCAGTCTCTGAATAAAGCTGG
AGGGTTGCTGCTAACGAAGCTTGCACTTCTGGTCCTGATGAGGTGCTGAGAAAAGCCAGCTTCA
GAAGCTCTAATGCATTTGCAACTGCCAATGATCTGCATACATCTCTTTTAGCAATATCATCTTT
ATTATGGTTAATGGCCTTTTCATGAGATCTGAAGGGAATGTCCATGTTTTTACTTGCATGGATT
GCATTTGACAGCCTATAGGATTTTGCATGTTCACGGAGTCCACTTTCTTGAATTGCAGTGCTTG
CACAGGTTGCACGTGCACCTAAAACTGGCTGTTTCTGCCCATTTGGAACTTCCTTGGTGGCATC
ATTATCATCATTGTTCCTTTCATTCTTAGACCCAACTCTCTTGGTCTGCTCCATTTTTTCTACT
CGAATGAATTCAAGGACTTCATCAAGTGCACTCTTTATCTCTGGATCCTCGAAATTATCCCAAA
AGAATTGCTCAGAATCTGGATCCACACAGTTGTCATGACTAGAATTTGAGATTTCGGAAGGTAA
TCCTCTCAATTTCCATCTCTTTTCCTTTTCAAGGTACCTAGCGTATCGTATCCCTAAAAGGTCA
CAGACTCGGCTCACAGCTGGTCTTATGTTTGTTTTTTTCCTCAAGTATGCTATCCTTCTACGGC
ATGCAGCTGGTGGAGCTGGAAGATCAGAAAGAGAGTTCCAATCTACGCGATGAGATACTGCTCC
AAGTGTTGCACGGGATCTAGTGTATATCATCAGCAATTTTCTGTCAGAATCGTATGTCCACACA
AATCGTTTCTCTCTCATGCAGCTTCCTCTTAAGATGGTAGATCGACTGATCCTTGGACTGCTTA
TCGTATCTTCATCCACCTGTGGGAGAGAATCAGTATGGAATGTGGATGGAGAGATTCTCTCAGA
TACCTCCTCATGTGGGATAGACTGTGCTGGTCTCGGTTCAGTGGATTCAATGGTTTCAACATTC
CGTTTGATAAATTTCAGGGTAATCTCATCAGCAGACCTTTTCCTTTTTTTAGAGGTTGATCCTG
AATTAACTTTTCGCCGTTTTCTTGCAGCAGGGACGGTGGGCTGTCCATGAAGCTGTCTATTCTG
AGAGGACGATACACAGAGCAC
						
					

						Genomic sequence
						
							CATGAAATTTTTCTCTCTGAGAAAGGAAAAGGCAGTAAAAATTTCAGTCTCTGAATAAAGCTGG
AGGGTTGCTGCTAACGAAGCTTGCACTTCTGGTCCTGATGAGGTGCTGAGAAAAGCCAGCTTCA
GAAGCTCTAATGCATTTGCAACTGCCAATGATCTGCATACATCTCTTTTAGCAATATCATCTTT
ATTATGGTTAATGGCCTTTTCATGAGATCTGAAGGGAATGTCCATGTTTTTACTTGCATGGATT
GCATTTGACAGCCTATAGGATTTTGCATGTTCACGGAGTCCACTTTCTTGAATTGCAGTGCTTG
CACAGGTTGCACGTGCACCTAAAACCTGATTATTACAAGGTAAAACATCAGCGTTAAATAAAAT
ATGTGTTTATTGAGATTAAATGTATCAGTACGTACTGGCTGTTTCTGCCCATTTGGAACTTCCT
TGGTGGCATCATTATCATCATTGTTCCTTTCATTCTTAGACCCAACTCTCTTGGTCTGCTCCAT
TTTTTCTACTCGAATGAATTCAAGGACTTCATCAAGTGCACTCTTTATCTCTGGATCCTCGAAA
TTATCCCAAAAGAATTGCTCAGAATCTGGATCCACACAGTTGTCATGACTAGAATTTGAGATTT
CGGAAGGTAATCCTCTCAATTTCCATCTCTTTTCCTTTTCAAGGTACCTAGCGTATCGTATCCC
TAAAAGGTCACAGACTCGGCTCACAGCTGGTCTTATGTTTGTTTTTTTCCTCAAGTATGCTATC
CTTCTACGGCATGCAGCTGGTGGAGCTGGAAGATCAGAAAGAGAGTTCCAATCTACGCGATGAG
ATACTGCTCCAAGTGTTGCACGGGATCTAGTGTATATCATCAGCAATTTTCTGTAGATAAAAAT
AACCAATCAGGTTCCCAGCATCATGGAAAACATTGTCTCCAGTAAAGTGCATTGAAACAAAATA
ATTGATGTACAACCAAGAAATACCTGTCAGAATCGTATGTCCACACAAATCGTTTCTCTCTCAT
GCAGCTTCCTCTTAAGATGGTAGATCGACTGATCCTTGGACTGCTTATCGTATCTTCATCCACC
TGTGGGAGAGAATCAGTATGGAATGTGGATGGAGAGATTCTCTCAGATACCTCCTCATGTGGGA
TAGACTGTGCTGGTCTCGGTTCAGTGGATTCAATGGTTTCAACATTCCGTTTGATAAATTTCAG
GGTAATCTCATCAGCAGACCTTTTCCTTTTTTTAGAGGTTGATCCTGAATTAACTTTTCGCCGT
TTTCTTGCAGCAGGGACGGTGGGCTGTCCATGAAGCTGTCTATTCTGAGAGGACGATACACAGA
GCAC
						
					

			
		

Sequences
Splice junction sequence	TAGAGGTTGATCCTGAATTAACTTTTCGCCGTTTTCTTGCAGCAGGGACGGTGGGCTGTCCATG AAGCTGTCTATTCTGAGAGGACGATACACAGAGCACcatgaaatttttctctctgagaaaggaa aaggcagtaaaaatttcagtctctgaataaagctggagggttgctgctaacgaagcttgcactt ctggtcct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1173 Transcript exons: 25384061-25384405,25384480-25384942,25385044-25385408 CATGAAATTTTTCTCTCTGAGAAAGGAAAAGGCAGTAAAAATTTCAGTCTCTGAATAAAGCTGG AGGGTTGCTGCTAACGAAGCTTGCACTTCTGGTCCTGATGAGGTGCTGAGAAAAGCCAGCTTCA GAAGCTCTAATGCATTTGCAACTGCCAATGATCTGCATACATCTCTTTTAGCAATATCATCTTT ATTATGGTTAATGGCCTTTTCATGAGATCTGAAGGGAATGTCCATGTTTTTACTTGCATGGATT GCATTTGACAGCCTATAGGATTTTGCATGTTCACGGAGTCCACTTTCTTGAATTGCAGTGCTTG CACAGGTTGCACGTGCACCTAAAACTGGCTGTTTCTGCCCATTTGGAACTTCCTTGGTGGCATC ATTATCATCATTGTTCCTTTCATTCTTAGACCCAACTCTCTTGGTCTGCTCCATTTTTTCTACT CGAATGAATTCAAGGACTTCATCAAGTGCACTCTTTATCTCTGGATCCTCGAAATTATCCCAAA AGAATTGCTCAGAATCTGGATCCACACAGTTGTCATGACTAGAATTTGAGATTTCGGAAGGTAA TCCTCTCAATTTCCATCTCTTTTCCTTTTCAAGGTACCTAGCGTATCGTATCCCTAAAAGGTCA CAGACTCGGCTCACAGCTGGTCTTATGTTTGTTTTTTTCCTCAAGTATGCTATCCTTCTACGGC ATGCAGCTGGTGGAGCTGGAAGATCAGAAAGAGAGTTCCAATCTACGCGATGAGATACTGCTCC AAGTGTTGCACGGGATCTAGTGTATATCATCAGCAATTTTCTGTCAGAATCGTATGTCCACACA AATCGTTTCTCTCTCATGCAGCTTCCTCTTAAGATGGTAGATCGACTGATCCTTGGACTGCTTA TCGTATCTTCATCCACCTGTGGGAGAGAATCAGTATGGAATGTGGATGGAGAGATTCTCTCAGA TACCTCCTCATGTGGGATAGACTGTGCTGGTCTCGGTTCAGTGGATTCAATGGTTTCAACATTC CGTTTGATAAATTTCAGGGTAATCTCATCAGCAGACCTTTTCCTTTTTTTAGAGGTTGATCCTG AATTAACTTTTCGCCGTTTTCTTGCAGCAGGGACGGTGGGCTGTCCATGAAGCTGTCTATTCTG AGAGGACGATACACAGAGCAC
Genomic sequence	CATGAAATTTTTCTCTCTGAGAAAGGAAAAGGCAGTAAAAATTTCAGTCTCTGAATAAAGCTGG AGGGTTGCTGCTAACGAAGCTTGCACTTCTGGTCCTGATGAGGTGCTGAGAAAAGCCAGCTTCA GAAGCTCTAATGCATTTGCAACTGCCAATGATCTGCATACATCTCTTTTAGCAATATCATCTTT ATTATGGTTAATGGCCTTTTCATGAGATCTGAAGGGAATGTCCATGTTTTTACTTGCATGGATT GCATTTGACAGCCTATAGGATTTTGCATGTTCACGGAGTCCACTTTCTTGAATTGCAGTGCTTG CACAGGTTGCACGTGCACCTAAAACCTGATTATTACAAGGTAAAACATCAGCGTTAAATAAAAT ATGTGTTTATTGAGATTAAATGTATCAGTACGTACTGGCTGTTTCTGCCCATTTGGAACTTCCT TGGTGGCATCATTATCATCATTGTTCCTTTCATTCTTAGACCCAACTCTCTTGGTCTGCTCCAT TTTTTCTACTCGAATGAATTCAAGGACTTCATCAAGTGCACTCTTTATCTCTGGATCCTCGAAA TTATCCCAAAAGAATTGCTCAGAATCTGGATCCACACAGTTGTCATGACTAGAATTTGAGATTT CGGAAGGTAATCCTCTCAATTTCCATCTCTTTTCCTTTTCAAGGTACCTAGCGTATCGTATCCC TAAAAGGTCACAGACTCGGCTCACAGCTGGTCTTATGTTTGTTTTTTTCCTCAAGTATGCTATC CTTCTACGGCATGCAGCTGGTGGAGCTGGAAGATCAGAAAGAGAGTTCCAATCTACGCGATGAG ATACTGCTCCAAGTGTTGCACGGGATCTAGTGTATATCATCAGCAATTTTCTGTAGATAAAAAT AACCAATCAGGTTCCCAGCATCATGGAAAACATTGTCTCCAGTAAAGTGCATTGAAACAAAATA ATTGATGTACAACCAAGAAATACCTGTCAGAATCGTATGTCCACACAAATCGTTTCTCTCTCAT GCAGCTTCCTCTTAAGATGGTAGATCGACTGATCCTTGGACTGCTTATCGTATCTTCATCCACC TGTGGGAGAGAATCAGTATGGAATGTGGATGGAGAGATTCTCTCAGATACCTCCTCATGTGGGA TAGACTGTGCTGGTCTCGGTTCAGTGGATTCAATGGTTTCAACATTCCGTTTGATAAATTTCAG GGTAATCTCATCAGCAGACCTTTTCCTTTTTTTAGAGGTTGATCCTGAATTAACTTTTCGCCGT TTTCTTGCAGCAGGGACGGTGGGCTGTCCATGAAGCTGTCTATTCTGAGAGGACGATACACAGA GCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_012037 						
					
						PMCS
						0.159015993

Conservation Information
Conserved circRNAs	osi_circ_012037
PMCS	0.159015993

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							25385371-25384111(+)
25385086-25384063(-)
						
					

						Potential amino acid sequence
						
							MKLSILRGRYTEHHEIFLSEKGKGSKNFSL*(+)
MREKRFVWTYDSDRKLLMIYTRSRATLGAVSHRVDWNSLSDLPAPPAACRRRIAYLRKKTNIRP
AVSRVCDLLGIRYARYLEKEKRWKLRGLPSEISNSSHDNCVDPDSEQFFWDNFEDPEIKSALDE
VLEFIRVEKMEQTKRVGSKNERNNDDNDATKEVPNGQKQPVLGARATCASTAIQESGLREHAKS
YRLSNAIHASKNMDIPFRSHEKAINHNKDDIAKRDVCRSLAVANALELLKLAFLSTSSGPEVQA
SLAATLQLYSETEIFTAFSFLREKNFMVLCVSSSQNRQLHGQPTVPAARKRRKVNSGSTSKKRK
RSADEITLKFIKRNVETIESTEPRPAQSIPHEEVSERISPSTFHTDSLPQVDEDTISSPRISRS
TILRGSCMREKRFVWTYDSDRKLLMIYTRSRATLGAVSHRVDWNSLSDLPAPPAACRRRIAYLR
KKTNIRPAVSRVCDLLGIRYARYLEKEKRWKLRGLPSEISNSSHDNCVDPDSEQFFWDNFEDPE
IKSALDEVLEFIRVEKMEQTKRVGSKNERNNDDNDATKEVPNGQKQPVLGARATCASTAIQESG
LREHAKSYRLSNAIHASKNMDIPFRSHEKAINHNKDDIAKRDVCRSLAVANALELLKLAFLSTS
SGPEVQASLAATLQLYSETEIFTAFSFLREKNFMVLCVSSSQNRQLHGQPTVPAARKRRKVNSG
STSKKRKRSADEITLKFIKRNVETIESTEPRPAQSIPHEEVSERISPSTFHTDSLPQVDEDTIS
SPRISRSTILRGSCMREKRFVWTYDSDRKLLMIYTRSRATLGAVSHRVDWNSLSDLPAPPAACR
RRIAYLRKKTNIRPAVSRVCDLLGIRYARYLEKEKRWKLRGLPSEISNSSHDNCVDPDSEQFFW
DNFEDPEIKSALDEVLEFIRVEKMEQTKRVGSKNERNNDDNDATKEVPNGQKQPVLGARATCAS
TAIQESGLREHAKSYRLSNAIHASKNMDIPFRSHEKAINHNKDDIAKRDVCRSLAVANALELLK
LAFLSTSSGPEVQASLAATLQLYSETEIFTAFSFLREKNFMVLCVSSSQNRQLHGQPTVPAARK
RRKVNSGSTSKKRKRSADEITLKFIKRNVETIESTEPRPAQSIPHEEVSERISPSTFHTDSLPQ
VDEDTISSPRISRSTILRGSCMREKRFVWTYDSDRKLLMIYTRSRATLGAVSHRVDWNSLSDLP
APPAACRRRIAYLRKKTNIRPAVSRVCDLLGIRYARYLEKEKRWKLRGLPSEISNSSHDNCVDP
DSEQFFWDNFEDPEIKSALDEVLEFIRVEKMEQTKRVGSKNERNNDDNDATKEVPNGQKQPVLG
ARATCASTAIQESGLREHAKSYRLSNAIHASKNMDIPFRSHEKAINHNKDDIAKRDVCRSLAVA
NALELLKLAFLSTSSGPEVQASLAATLQLYSETEIFTAFSFLREKNFM(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	25385371-25384111(+) 25385086-25384063(-)
Potential amino acid sequence	MKLSILRGRYTEHHEIFLSEKGKGSKNFSL*(+) MREKRFVWTYDSDRKLLMIYTRSRATLGAVSHRVDWNSLSDLPAPPAACRRRIAYLRKKTNIRP AVSRVCDLLGIRYARYLEKEKRWKLRGLPSEISNSSHDNCVDPDSEQFFWDNFEDPEIKSALDE VLEFIRVEKMEQTKRVGSKNERNNDDNDATKEVPNGQKQPVLGARATCASTAIQESGLREHAKS YRLSNAIHASKNMDIPFRSHEKAINHNKDDIAKRDVCRSLAVANALELLKLAFLSTSSGPEVQA SLAATLQLYSETEIFTAFSFLREKNFMVLCVSSSQNRQLHGQPTVPAARKRRKVNSGSTSKKRK RSADEITLKFIKRNVETIESTEPRPAQSIPHEEVSERISPSTFHTDSLPQVDEDTISSPRISRS TILRGSCMREKRFVWTYDSDRKLLMIYTRSRATLGAVSHRVDWNSLSDLPAPPAACRRRIAYLR KKTNIRPAVSRVCDLLGIRYARYLEKEKRWKLRGLPSEISNSSHDNCVDPDSEQFFWDNFEDPE IKSALDEVLEFIRVEKMEQTKRVGSKNERNNDDNDATKEVPNGQKQPVLGARATCASTAIQESG LREHAKSYRLSNAIHASKNMDIPFRSHEKAINHNKDDIAKRDVCRSLAVANALELLKLAFLSTS SGPEVQASLAATLQLYSETEIFTAFSFLREKNFMVLCVSSSQNRQLHGQPTVPAARKRRKVNSG STSKKRKRSADEITLKFIKRNVETIESTEPRPAQSIPHEEVSERISPSTFHTDSLPQVDEDTIS SPRISRSTILRGSCMREKRFVWTYDSDRKLLMIYTRSRATLGAVSHRVDWNSLSDLPAPPAACR RRIAYLRKKTNIRPAVSRVCDLLGIRYARYLEKEKRWKLRGLPSEISNSSHDNCVDPDSEQFFW DNFEDPEIKSALDEVLEFIRVEKMEQTKRVGSKNERNNDDNDATKEVPNGQKQPVLGARATCAS TAIQESGLREHAKSYRLSNAIHASKNMDIPFRSHEKAINHNKDDIAKRDVCRSLAVANALELLK LAFLSTSSGPEVQASLAATLQLYSETEIFTAFSFLREKNFMVLCVSSSQNRQLHGQPTVPAARK RRKVNSGSTSKKRKRSADEITLKFIKRNVETIESTEPRPAQSIPHEEVSERISPSTFHTDSLPQ VDEDTISSPRISRSTILRGSCMREKRFVWTYDSDRKLLMIYTRSRATLGAVSHRVDWNSLSDLP APPAACRRRIAYLRKKTNIRPAVSRVCDLLGIRYARYLEKEKRWKLRGLPSEISNSSHDNCVDP DSEQFFWDNFEDPEIKSALDEVLEFIRVEKMEQTKRVGSKNERNNDDNDATKEVPNGQKQPVLG ARATCASTAIQESGLREHAKSYRLSNAIHASKNMDIPFRSHEKAINHNKDDIAKRDVCRSLAVA NALELLKLAFLSTSSGPEVQASLAATLQLYSETEIFTAFSFLREKNFM(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os02g0633100_circ_g.2

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