Detail information of Os05g0568000_circ_g.4


General Information
CircRNA Name Os05g0568000_circ_g.4
ID in PlantcircBase osa_circ_042186
Alias NA
Organism Oryza sativa
Position chr5: 28279939-28280049  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0568000
Parent gene annotation Similar to FAE1. (Os05t0568000-02)
Parent gene strand -
Alternative splicing Os05g0568000_circ_g.5
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0568000-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTGAAGGCCTTGTTGTCCGCGCCCTTGTGCGTGCGCACGACGTGCTTGAGGGCgtccttgga
cagcgacacgccggtcttcccctcgtcgtcctgctcctggtacacgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 111
Transcript exons: 28279939-28280049
GTCCTTGGACAGCGACACGCCGGTCTTCCCCTCGTCGTCCTGCTCCTGGTACACGCAGTTGAAG
GCCTTGTTGTCCGCGCCCTTGTGCGTGCGCACGACGTGCTTGAGGGC

Genomic sequence GTCCTTGGACAGCGACACGCCGGTCTTCCCCTCGTCGTCCTGCTCCTGGTACACGCAGTTGAAG
GCCTTGTTGTCCGCGCCCTTGTGCGTGCGCACGACGTGCTTGAGGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.311562312
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study