Plant Circular RNA Database

Detail information of Os10g0103800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os10g0103800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_006091
					
						Alias
						Os_ciR4375
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 302726-305050  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os10g0103800						
					
						Parent gene annotation
						
							Inositol 1, 3, 4-trisphosphate 56-kinase family protein. (Os10t0
103800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						5/1
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0103800-01:8

General Information
CircRNA Name	Os10g0103800_circ_g.1
ID in PlantcircBase	osa_circ_006091
Alias	Os_ciR4375
Organism	Oryza sativa
Position	chr10: 302726-305050 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os10g0103800
Parent gene annotation	Inositol 1, 3, 4-trisphosphate 56-kinase family protein. (Os10t0 103800-01)
Parent gene strand	-
Alternative splicing	NA
Support reads	5/1
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0103800-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGAGGCATGAGGACTAACCTTGTGCAATATAATATCAAACGGGCCTTGTTCAGAGAGAGGACGA
GTCTCATCAATTGATACAAAATGAATGCTCTTCTTCcaggaaaatagttgatgtcaatgacata
gtaccgatcctttcttccatgctctctaatcatatcgaagttaaacagtctaagaccctgaaat
attttaca

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 767
Transcript exons: 302726-302810,302884-302939,303376-303552,303654-303773,
303972-304064,304516-304636,304740-304772,304969-305050
CAGGAAAATAGTTGATGTCAATGACATAGTACCGATCCTTTCTTCCATGCTCTCTAATCATATC
GAAGTTAAACAGTCTAAGACCCAGTCTGCGCCGAAGCTCCCTCCCAAGTTTCTCTAGAAGCGGC
TTTGGAGGAAGTTCAGCAATAGAAGGGTCAACTTCTGCATCTTCTGCAGTATTTGTAGCACAGG
AAACTCTCGGAAAACGGAAGATGCCATCATTGTTTTCCAGATCATAGATGTTTACATCAGGAAG
AGAAAATCGGCGAACAACACGTATTGTTTCACCAACAACATATACCTTAAATAAGATCCCACCA
TGATTGACAAATTCCTGGAGAACCAGAGGAGGATCAAGCATTGACAAGGATGTCTCCACATATG
CAAGAGATAGTTCATGGGATTTCGATGTTCCATCAACTACCAATGGTTTGGCAACCAAGGGCAA
CGTTAGTCCAGCCTTGGCAACTGCAGATGGTATAGACAATGGGTCTTTCATGATAACCAGCTGT
CGTGGAGTGCAAACCTCACCATAGGCATTTGATAAGTTCAAATCAGCAACTTCTTGAAGCATTG
ACTGGCGATTGTGCAAATGTTGAATAGCATTAGGTGGATCAAGGACAGTTACTTCTGGATGTTC
TTCACGATAATCCTCCAAAACTTGCTGCCACTCCTTGTCAGTAAGCTTGTGCAATATAATATCA
AACGGGCCTTGTTCAGAGAGAGGACGAGTCTCATCAATTGATACAAAATGAATGCTCTTCTTC
						
					

						Genomic sequence
						
							CAGGAAAATAGTTGATGTCAATGACATAGTACCGATCCTTTCTTCCATGCTCTCTAATCATATC
GAAGTTAAACAGTCTAAGACCCTGAAATATTTTACAGTTAGGTATAACAAATGATAAACCAGAT
ATTGTTAACATGAATGGGATTTACTCATACCAGTCTGCGCCGAAGCTCCCTCCCAAGTTTCTCT
AGAAGCGGCTTTGGAGGAAGTTCTGTCATTTTATGGCATTTTGCTCAGTAACATAAATATGTTT
ATAATTTGATAATTGGAAAGTTGGTATTCGGTCAGACTAAACAACTTTAACAATTGAGTTGTTT
ATTTCCCTGGAGAACCACCAGGGAGCTGCACTAGTTGATATTTTTAGTAGACAGATTTAGCAGA
TAGCTTATTCATCAGACTAAAATACAGGCTTATTAGCCCGAAAGGACTCCTATCATGCCCATGA
AGCAAGCAACTTGGAATAGTTTAGACCAAACTAAAAGGAAACATTAGGTATGTGCCACTCTAAA
GTTGCAAACTGAGATACGCCATTGATTTCCTGTTCTCTACATGCCACTCCAAACTCCCAAATTT
GTAAGGTTTGGAAATATGCCACTATACACCCAATATGGAATAATAAAGGTCTGACAGCAACACA
GAAGGCTCACCAGCAATAGAAGGGTCAACTTCTGCATCTTCTGCAGTATTTGTAGCACAGGAAA
CTCTCGGAAAACGGAAGATGCCATCATTGTTTTCCAGATCATAGATGTTTACATCAGGAAGAGA
AAATCGGCGAACAACACGTATTGTTTCACCAACAACATATACCTTAAATAAGATCCCACCTGTA
CAACAAAAAACTCAGCACTTCAATATCCACATTTGAGGAAGTGTTAGGACAGATAAAAGATTTG
GAAACAAGAATTGAACATGATAAATAAGTTACCATGATTGACAAATTCCTGGAGAACCAGAGGA
GGATCAAGCATTGACAAGGATGTCTCCACATATGCAAGAGATAGTTCATGGGATTTCGATGTTC
CATCAACTACCAATGGTTTGGCAACTGTATATAGAGTACTATTCTGATCAGAATCATGCCAGAA
TTTTGCCATCCATTTTTTAACAGATTTGATGAAATGAATTGGAAATTGATAACCTAGAATTCCT
CTATATATATTCCTCAAAAAGAAGACTTAGTGACATAGATAGTGTGCTCTAATTTTAAGGCTGA
GCATGGATGTAGAATAATTGTATAACTCACCCAAGGGCAACGTTAGTCCAGCCTTGGCAACTGC
AGATGGTATAGACAATGGGTCTTTCATGATAACCAGCTGTCGTGGAGTGCAAACCTCACCTGCA
TTGGTTGATTGGTTGAACACAAGAAATAACAAACAAAAGGCTATGCATTTTTCTTGGTAGAGGA
GGTATGTAATTTTCAGACATAAGCCAGTATTAAGATTTGCAGTTTACATTTTTAGAAATGCTAA
GAAACTACTTTGCAAATTCAGGAAAGCAGTGCAATATAACAAAGACTTATCTGTTTTTACAGTT
CCACTAAATTTCATGGATAATTACATAATGTGGGTATTAATATAATGCTCTCTTCTTATCCCCT
ATTTTTGTACTGTGAGCGAAGGTTCTTTGAAGGATCAGTATTACTGTTCTACATGGTAATCTCA
TGCGTACAAGAGTTAAATCACAACATTAACTTGGACTAAAGTGAATAGTAAGAACATTGAAACT
ATAACACAATCTCTTCGATACCATATGAGTACCAACATTCAATAATTATATGCAAAACTTACCA
TAGGCATTTGATAAGTTCAAATCAGCAACTTCTTGAAGCATTGACTGGCGATTGTGCAAATGTT
GAATAGCATTAGGTGGATCAAGGACAGTTACTTCTGGATGTTCTTCACGATAATCCTTCAAGAA
GATGAAAAAGGTCAACAAGGACAAAAATGAATTGAAGAGTGTTTACTCTTTCTTTGATCGAATC
AAAGTTTTTGCTTTGGTGCTCAAGGACTACCTCCAAAACTTGCTGCCACTCCTTGTCAGTAAGC
TGATAAAAAAGGGAAATCAATCAGAAAAAAAATTATATCTTAGGCAGCATGGCATATACAGGAA
AAAGTTTTTAACATATCTGATAAGATTAAGGCAGTGACAAAAGGCACAATATGGTTGTTTAACA
AAACCTAACTAATATATGGCATACTGTTTTTGATTTCATGCATGCAAAGAGAGGCATGAGGACT
AACCTTGTGCAATATAATATCAAACGGGCCTTGTTCAGAGAGAGGACGAGTCTCATCAATTGAT
ACAAAATGAATGCTCTTCTTC
						
					

			
		

Sequences
Splice junction sequence	AGAGGCATGAGGACTAACCTTGTGCAATATAATATCAAACGGGCCTTGTTCAGAGAGAGGACGA GTCTCATCAATTGATACAAAATGAATGCTCTTCTTCcaggaaaatagttgatgtcaatgacata gtaccgatcctttcttccatgctctctaatcatatcgaagttaaacagtctaagaccctgaaat attttaca
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 767 Transcript exons: 302726-302810,302884-302939,303376-303552,303654-303773, 303972-304064,304516-304636,304740-304772,304969-305050 CAGGAAAATAGTTGATGTCAATGACATAGTACCGATCCTTTCTTCCATGCTCTCTAATCATATC GAAGTTAAACAGTCTAAGACCCAGTCTGCGCCGAAGCTCCCTCCCAAGTTTCTCTAGAAGCGGC TTTGGAGGAAGTTCAGCAATAGAAGGGTCAACTTCTGCATCTTCTGCAGTATTTGTAGCACAGG AAACTCTCGGAAAACGGAAGATGCCATCATTGTTTTCCAGATCATAGATGTTTACATCAGGAAG AGAAAATCGGCGAACAACACGTATTGTTTCACCAACAACATATACCTTAAATAAGATCCCACCA TGATTGACAAATTCCTGGAGAACCAGAGGAGGATCAAGCATTGACAAGGATGTCTCCACATATG CAAGAGATAGTTCATGGGATTTCGATGTTCCATCAACTACCAATGGTTTGGCAACCAAGGGCAA CGTTAGTCCAGCCTTGGCAACTGCAGATGGTATAGACAATGGGTCTTTCATGATAACCAGCTGT CGTGGAGTGCAAACCTCACCATAGGCATTTGATAAGTTCAAATCAGCAACTTCTTGAAGCATTG ACTGGCGATTGTGCAAATGTTGAATAGCATTAGGTGGATCAAGGACAGTTACTTCTGGATGTTC TTCACGATAATCCTCCAAAACTTGCTGCCACTCCTTGTCAGTAAGCTTGTGCAATATAATATCA AACGGGCCTTGTTCAGAGAGAGGACGAGTCTCATCAATTGATACAAAATGAATGCTCTTCTTC
Genomic sequence	CAGGAAAATAGTTGATGTCAATGACATAGTACCGATCCTTTCTTCCATGCTCTCTAATCATATC GAAGTTAAACAGTCTAAGACCCTGAAATATTTTACAGTTAGGTATAACAAATGATAAACCAGAT ATTGTTAACATGAATGGGATTTACTCATACCAGTCTGCGCCGAAGCTCCCTCCCAAGTTTCTCT AGAAGCGGCTTTGGAGGAAGTTCTGTCATTTTATGGCATTTTGCTCAGTAACATAAATATGTTT ATAATTTGATAATTGGAAAGTTGGTATTCGGTCAGACTAAACAACTTTAACAATTGAGTTGTTT ATTTCCCTGGAGAACCACCAGGGAGCTGCACTAGTTGATATTTTTAGTAGACAGATTTAGCAGA TAGCTTATTCATCAGACTAAAATACAGGCTTATTAGCCCGAAAGGACTCCTATCATGCCCATGA AGCAAGCAACTTGGAATAGTTTAGACCAAACTAAAAGGAAACATTAGGTATGTGCCACTCTAAA GTTGCAAACTGAGATACGCCATTGATTTCCTGTTCTCTACATGCCACTCCAAACTCCCAAATTT GTAAGGTTTGGAAATATGCCACTATACACCCAATATGGAATAATAAAGGTCTGACAGCAACACA GAAGGCTCACCAGCAATAGAAGGGTCAACTTCTGCATCTTCTGCAGTATTTGTAGCACAGGAAA CTCTCGGAAAACGGAAGATGCCATCATTGTTTTCCAGATCATAGATGTTTACATCAGGAAGAGA AAATCGGCGAACAACACGTATTGTTTCACCAACAACATATACCTTAAATAAGATCCCACCTGTA CAACAAAAAACTCAGCACTTCAATATCCACATTTGAGGAAGTGTTAGGACAGATAAAAGATTTG GAAACAAGAATTGAACATGATAAATAAGTTACCATGATTGACAAATTCCTGGAGAACCAGAGGA GGATCAAGCATTGACAAGGATGTCTCCACATATGCAAGAGATAGTTCATGGGATTTCGATGTTC CATCAACTACCAATGGTTTGGCAACTGTATATAGAGTACTATTCTGATCAGAATCATGCCAGAA TTTTGCCATCCATTTTTTAACAGATTTGATGAAATGAATTGGAAATTGATAACCTAGAATTCCT CTATATATATTCCTCAAAAAGAAGACTTAGTGACATAGATAGTGTGCTCTAATTTTAAGGCTGA GCATGGATGTAGAATAATTGTATAACTCACCCAAGGGCAACGTTAGTCCAGCCTTGGCAACTGC AGATGGTATAGACAATGGGTCTTTCATGATAACCAGCTGTCGTGGAGTGCAAACCTCACCTGCA TTGGTTGATTGGTTGAACACAAGAAATAACAAACAAAAGGCTATGCATTTTTCTTGGTAGAGGA GGTATGTAATTTTCAGACATAAGCCAGTATTAAGATTTGCAGTTTACATTTTTAGAAATGCTAA GAAACTACTTTGCAAATTCAGGAAAGCAGTGCAATATAACAAAGACTTATCTGTTTTTACAGTT CCACTAAATTTCATGGATAATTACATAATGTGGGTATTAATATAATGCTCTCTTCTTATCCCCT ATTTTTGTACTGTGAGCGAAGGTTCTTTGAAGGATCAGTATTACTGTTCTACATGGTAATCTCA TGCGTACAAGAGTTAAATCACAACATTAACTTGGACTAAAGTGAATAGTAAGAACATTGAAACT ATAACACAATCTCTTCGATACCATATGAGTACCAACATTCAATAATTATATGCAAAACTTACCA TAGGCATTTGATAAGTTCAAATCAGCAACTTCTTGAAGCATTGACTGGCGATTGTGCAAATGTT GAATAGCATTAGGTGGATCAAGGACAGTTACTTCTGGATGTTCTTCACGATAATCCTTCAAGAA GATGAAAAAGGTCAACAAGGACAAAAATGAATTGAAGAGTGTTTACTCTTTCTTTGATCGAATC AAAGTTTTTGCTTTGGTGCTCAAGGACTACCTCCAAAACTTGCTGCCACTCCTTGTCAGTAAGC TGATAAAAAAGGGAAATCAATCAGAAAAAAAATTATATCTTAGGCAGCATGGCATATACAGGAA AAAGTTTTTAACATATCTGATAAGATTAAGGCAGTGACAAAAGGCACAATATGGTTGTTTAACA AAACCTAACTAATATATGGCATACTGTTTTTGATTTCATGCATGCAAAGAGAGGCATGAGGACT AACCTTGTGCAATATAATATCAAACGGGCCTTGTTCAGAGAGAGGACGAGTCTCATCAATTGAT ACAAAATGAATGCTCTTCTTC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.325867594

Conservation Information
Conserved circRNAs	NA
PMCS	0.325867594

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							304560-304611(-)
302775-305023(-)
						
						Potential amino acid sequence
						
							MLQEVADLNLSNAYGEVCTPRQLVIMKDPLSIPSAVAKAGLTLPLVAKPLVVDGTSKSHELSLA
YVETSLSMLDPPLVLQEFVNHGGILFKVYVVGETIRVVRRFSLPDVNIYDLENNDGIFRFPRVS
CATNTAEDAEVDPSIAELPPKPLLEKLGRELRRRLGLRLFNFDMIREHGRKDRYYVIDINYFPG
RRAFILYQLMRLVLSLNKARLILYCTSLLTRSGSKFWRIIVKNIQK*(-)
MEERIGTMSLTSTIFLEEEHSFCIN*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	304560-304611(-) 302775-305023(-)
Potential amino acid sequence	MLQEVADLNLSNAYGEVCTPRQLVIMKDPLSIPSAVAKAGLTLPLVAKPLVVDGTSKSHELSLA YVETSLSMLDPPLVLQEFVNHGGILFKVYVVGETIRVVRRFSLPDVNIYDLENNDGIFRFPRVS CATNTAEDAEVDPSIAELPPKPLLEKLGRELRRRLGLRLFNFDMIREHGRKDRYYVIDINYFPG RRAFILYQLMRLVLSLNKARLILYCTSLLTRSGSKFWRIIVKNIQK(-) MEERIGTMSLTSTIFLEEEHSFCIN(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os10g0103800_circ_g.1

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