Detail information of BGIOSGA014972_circ_g.2


General Information
CircRNA Name BGIOSGA014972_circ_g.2
ID in PlantcircBase osi_circ_014424
Alias Chr04:23379057_23379399(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 21000676-21001018  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014972
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014972_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA014972-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCAGAATATTCTTATTGCTAAAGTTATCAGTAGCAACTTGAAGCTCCCGGAGTGAGAATCTCT
TAAGTTGGCCAAGGTGCACTTCCGGATCCTCCTCAGcctcgcaatcgtgatgcgacactcccgt
tagccatgtagggatagacaagtaaccgttctgtaggcgtcatgcaaaatccacgaagccgaag
caggttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCGCAATCGTGATGCGACACTCCCGTTAGCCATGTAGGGATAGACAAGTAACCGTTCTGTAG
GCGTCATGCAAAATCCACGAAGCCGAAGCAGGTTCCTATGCACCGCCATGCTAATCATTTCAAC
TTCTGTTTGGAACTGGAGCTCACCACCAGGGGTACGTTCTTCTTTTAATCTTTTCACTGCTACC
AACGAGCCATCTGCCAATCTACCCTTGTACACCTTTCCAAAGCCACCTCTTCCCAGAATATTCT
TATTGCTAAAGTTATCAGTAGCAACTTGAAGCTCCCGGAGTGAGAATCTCTTAAGTTGGCCAAG
GTGCACTTCCGGATCCTCCTCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021