Detail information of BGIOSGA019892_circ_g.2


General Information
CircRNA Name BGIOSGA019892_circ_g.2
ID in PlantcircBase osi_circ_015487
Alias Chr05:21509878_21510390(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 21822365-21822877  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA019892
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA019892_circ_igg.1 BGIOSGA019892_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TG-AA
Number of exons covered BGIOSGA019892-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCTCTGAATTCTAAAGATTATCTTATGGGAGACAAACTGCAAATGAACATGAGATAATGAAAT
TTTCTACTGCATGACACGCTTTTGATTTGCTGATAAggtgacatgcccgagcttattttttgtt
ccatgctgtttgtctaaattgcattcattaagtactgtagtgacatatgcagtgctggcgcctt
tggccatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGACATGCCCGAGCTTATTTTTTGTTCCATGCTGTTTGTCTAAATTGCATTCATTAAGTACT
GTAGTGACATATGCAGTGCTGGCGCCTTTGGCCATTTTTATTGCTGTCTGGCGCCTTTTACAAC
TAGATTAATTACATTTGCATTATGCATTTTCTTTGCATCCTGGATGCTTCCCTGTTGGACACAC
TATATTGATAAATCTAGTTCAAGTTACTACCTGCTGCCACAGGGGAAATCCGCAAGTAAATTTT
AGCGATACAATATGGAAATTGTAAAGAGTGGCTTATATTTAAAGGTGTTCCACACCTTATTCTG
GGAGGACTTTGCATAGTCTTGTTCCAGCCTACACTGGAATCTTGCACTGCACTTCACGTTAGTG
TTGTAGCATATGGCTATAAGCTAACCCATACCTCTGAATTCTAAAGATTATCTTATGGGAGACA
AACTGCAAATGAACATGAGATAATGAAATTTTCTACTGCATGACACGCTTTTGATTTGCTGATA
A
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021