Detail information of BGIOSGA022396_circ_g.4


General Information
CircRNA Name BGIOSGA022396_circ_g.4
ID in PlantcircBase osi_circ_016715
Alias Chr06:3467519_3468041(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 4240551-4241073  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA022396
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA022396_circ_g.1 BGIOSGA022396_circ_g.2 BGIOSGA022396_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-GA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTTTAAAGTTCTTCATACAAGCGAATTTTGAACTATGACTGGATATAATCAATGATGCAAACT
TAAACACTTTTGCCTTGATGTCTTCATTATTATGAGgttgcattctttcttagctgacaaatac
tcctttttatcaatcctccactagattaatgcgggataagctatttttcttagctgttagcatt
agttgtgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGCATTCTTTCTTAGCTGACAAATACTCCTTTTTATCAATCCTCCACTAGATTAATGCGGGA
TAAGCTATTTTTCTTAGCTGTTAGCATTAGTTGTGTATCATCGGAGTTGTTACACCTCATTTAC
TTGTCTTACGTATGTGGCCATGTCAATAAGAACTACAAAGATAAAAAATGTTGTATGATCATTA
GGGAAAGGGAACCTTTAACAAATTGTGAAATTGGCCTCTAAACAAGAAAACTACTGTTCCAGAG
CATAGAATTAGTTCAATTGTTTTGCAGGATTCTGGTTCAGTTATGTTGGTAAAAAGGTTTTGGG
ATATTTCAAAGGGAATGCTGTAGTGGCTAAATACTTGGATGTTTTCATGGAACTGTTAAACACA
TGAAATCATGGCTTACACAATCTTGCCAGTGAAAAATTAAGTTTAAAGTTCTTCATACAAGCGA
ATTTTGAACTATGACTGGATATAATCAATGATGCAAACTTAAACACTTTTGCCTTGATGTCTTC
ATTATTATGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021