Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G24740_circ_g.4 |
ID in PlantcircBase | ath_circ_040276 |
Alias | 5:8476556-8476739 |
Organism | Arabidpsis thaliana |
Position | chr5: 8476556-8476739 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT5G24740 |
Parent gene annotation |
Protein of unknown function (DUF1162) |
Parent gene strand | - |
Alternative splicing | AT5G24740_circ_g.3 |
Support reads | 3/2/2/2/1/2 |
Tissues | seedling;root;leaf;flower |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G24740.2:1 AT5G24740.3:1 AT5G24740.1:1 AT5G24740.4:1 AT5G24740.6:1 AT5G24740.5:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.493858086 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |