Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G03880_circ_g.4 |
ID in PlantcircBase | ath_circ_000502 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 986854-987282 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | SMALT, Segemehl |
Parent gene | AT1G03880 |
Parent gene annotation |
CRU2 |
Parent gene strand | + |
Alternative splicing | AT1G03880_circ_g.1 AT1G03880_circ_g.2 AT1G03880_circ_g.3 AT1G03880_circ_g.5 AT1G03880_circ_g.6 |
Support reads | 3 |
Tissues | siliques and seeds |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G03880.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.172687782 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
987139-987279(+) |
Potential amino acid sequence |
MRCTENLDDPSDADVYKPSLGYISTLNSYNLPILRLLRLSALRGSIRKPFLIAGNNPQGQEWLQ GRKQQKQNNIFNGFAPEILAQAFKINVETAQQLQNQQDNRGNIVKVNGPFGVIRPPLRRGEGGQ QPHEIANGLEETLCTMRCTENLDDPSDADVYKPSLGYISTLNSYNLPILRLLRLSALRGSIRKP FLIAGNNPQGQEWLQGRKQQKQNNIFNGFAPEILAQAFKINVETAQQLQNQQDNRGNIVKVNGP FGVIRPPLRRGEGGQQPHEIANGLEETLCTMRCTENLDDPSDADVYKPSLGYISTLNSYNLPIL RLLRLSALRGSIRKPFLIAGNNPQGQEWLQGRKQQKQNNIFNGFAPEILAQAFKINVETAQQLQ NQQDNRGNIVKVNGPFGVIRPPLRRGEGGQQPHEIANGLEETLCTMRCTENLDDPSDADVYKPS LGYISTLNSYNLPILRLLRLSALRGSIRK(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015 |