Detail information of PGSC0003DMG400025186_circ_igg.1


General Information
CircRNA Name PGSC0003DMG400025186_circ_igg.1
ID in PlantcircBase stu_circ_000230
Alias chr01:85684075|85688842
Organism Solanum tuberosum
Position chr1: 85684076-85688842  JBrowse»
Reference genome 3.0.38
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   CT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGGGAGAGAAGTACCATAGAGAAGGATGCTCCATAATAAGGAAAAGCAGCTGTTATAAATCT
CTCATATTCATTATGTCTGAAGGGTCGAACAGGAATaggtcgtaaggaatggtgctgagccaat
cttttaactgtcattgccatgtacttgccctggtgctcggccagcgccaactctggttcactag
gttccctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGTCGTAAGGAATGGTGCTGAGCCAATCTTTTAACTGTCATTGCCATGTACTTGCCCTGGTGC
TCGGCCAGCGCCAACTCTGGTTCACTAGGTTCCCTGCTACCATCTCCAGAGAAAGTTCCTGCTC
CATATGGAGAACCTCCAATTATTGAATCCATTCTAAACATTCCTGCTCCAAACGTGTATCCTAT
TGGAACATAGAGCATCCCATGGTGAGCTAATTGAGTGACTGCTGTCCAGCTGCGATATGAAAAA
TGAAACATTTCAATATGGTCCACTGGATTTCATTAGCAGATTGTCGTCGACCAAGCTTTGTCCT
TCAATAATTGGTTGCATGATTATTATTGGAAGAAGGATATAAGTGGATCATCAGAAAGAAGAAA
ATAGAACAGAAGATAAAGGATATAGAGATAGCATAAGAGTACAACTATAGTCCTTCATAGACTA
TGTTAGTCTGTGGATAAAATGTCCTGTTTAAGGATTCTGCGACAACACATACAAGCAAGCTATT
TTCATAAAATAACTAATCACAATCCAATTCATCCAAGATTTGAAGTTCATCCATTAGCATGAAT
GCATGATGACTTCCCAAGGTTGCAAAACCAGTAAGATCAATAACAAAAGAGACCTATTAGCCCG
AGGAAGTTACTACAATAATAACAATTTTTTTGAATTAGTATACCTCTAAAATGACTTCTGAGCA
AATATGGTTGGAATGACAGTAGATGATGCACCTATGGAGTAGTGGCTACAGCTACAGATCTCTA
TCACTATAATGGATAGTTATCATAGCAGTCAACCAGTTTGCTAACTGAAATTTTATACTGACAA
TTGTAAAGTGTTCTTGATGCCTTATATACCTATTACAATAAAATCTGACTGCAAGATACTTCAA
GTCCCTTAGGCCTGTTGGAAAATCAAATTTCTTAAAGTACTTAATTGTTGGAGATCAATCAGAA
ACAGCACTTTTGGGTCTCTAGAGCCTTCGTCCTCAATGATTTTTTGCATATCATTGAGATGACG
GGATTCCTTTAACATAATCAGTACCAGTTAAACTGATCACTAGTTGAAGGCAATCCTTTGGATG
CTATGGAGACTACATACAATTTTTGTAAGGCTGACGAAAGGATTTTTCAGACTAGTTACTAGTA
TGCACTCTCATCAATTATGTTCTGGACTTAGATTCTGCTAGTGTTCTCCGTTTCTTCTGTCTCT
TCATTGGCAACTACAACTAGGTGAAGCAATTATCTGAAGGGTATCTATCAATTTGCTTACGTAG
AACTTTGTCATATTTCTACTCTTTTTTGGTTTACAAATATGTCACTACACCTTAGTCATTGTCC
AAATGCATTAAGATGTTGCAATTATCTCACACACAGTGATCAGACATCATCGATGACATAAAAG
AAACGATTAACAGTATAAACACAAGTAAATGAATAACAGAAGACAGACTTACGCGGTGGTCTCC
TGCCCACCTCCTTGTGTACCAGTACTGACAAAGAACCCTGCAGGCAATCCAGCAAGCTTTTGTT
CTCTCCACAACTTCCCCGTCGAGTCAAAAAATGCCTTCATCTGAGCTGCCATACATCCATATCT
TGTAGGAAATCCAAACAAGAATCCATCAGCTTCCACCAGCTCATCCACAGATATCACTGGAATC
TCATCATTTTTTGGGGGGGCTTTCATTCGTTCCAAAACATCTGGTGCCAAAATTTCAGGAACCA
TATACAAAACCCCTTCAACACCTTCAATACCATCAACCCCTTTTTTCAGCCTTCTAGCTAATGT
TTCAACATGTCCATACATTGAATAAAACACAATGAATATTCTCAACTTCTTGGACCCTTCTGCT
TCTGACCCTGTTATATCAGTTTGACTCACTGGTCTCTCTGCTGGTTCATTTATAGGAAACTTGT
TCTTGGTTGGCATACAACCCCCTCCTTTACCCATTGAGCTGAATTTAATCAAGAAATCCAAAAT
TATCACAACCCTTTATCTCAAAGTTTTCAACTTTTTCTCCAAGTTGGACTTTTTCCAAATAGGT
TGTGAGCAATTCTTGAACTGAGAATTTAATAGGGAGCTTTAGCTATTTTAGATTATCACAAGCA
GAGTTGACCAGAAGTCCTCAACTGTTTTTGGAACTTTCTACTAGAAGCTTCGCTGGCAAGTTCT
AATTTACTGCCAACCTCAAAGTGAATTCGACGATTCAAATGATTTTGACAGTATTATACTGAAG
AAACAAATGTGTCATAGATCTGACTGAAGAAAAGAAATTTCAATAAGCAATTTTCTGGATCTTG
AAATTATTGCCGTCAGGAAAAGTGGCAGAACACCATCCAACTTCCCTTGTTTTGTGTTATTCCG
ATTAAGCCCCTTCCTTCTTCTATACACACTACTTCTTGTCAAAACAGGCCGGCCCAACTCCAAT
TTTTCAGAGGTAAGAAATTTAATGGACTGGGCTCGTCTTTTTTTTGAATAATTTCTCTATGTTA
ATATATTTTCAAGTTTTTAATACTTTTGACAAATTTATATCAAAGTATATAGAATTTATTAGTT
TTAATATTTTTAATCAAAATTTAAATATGCATAACTAAAATTCACAATTTAGAATTTATTAATT
TTTGATGGACTAAAAATGCTATTAACCCTTAAAATAAGTATGAGATCATCAAAAGCTTACGAGA
ATGAAGACTTAAAAAGCAAAGCAAATTATAAGCTGTTGAAGTACAATTGCTCCTTCTTATCTAA
CTAAGGGTCCGTTTGATCATGTGATATGTATGATCATGTGGCAAAGTGAACGTGTATTTAAGTT
CAGTTAGTCAAGTAAATGAGAGTTATTAAAATTGACAATAGTTTGGGGACGAACTAATAATTCA
CCTAACGATAAAAATGTACTAATTTTGAAAAAATATAAATAAAATGAAAAAATAATTTAGTAAA
TAATAAATTAATAAAAATATACTAACCTAACCTTTATGTATACCAAGAAATAAGAAAAAAAATA
CATAACTTTGTAGATTACAAAAGAATTTAAACTAAGTATAATATAAGGTAGTACTATTTAAAAG
CTATAAATATGTAACCTAAATTATTATTAACAATCAAATAACAAACTAAAAGGAAAACTGAACA
AACAATTTAAGATCGCTTACACTGAGATTTGATCTTGGTATGAGAACAGGTAAATGAACCCAGT
AACCACTGAGCCACGCTTCTTGATTGTATTTAGTGGATTCATTTTAGATATACAACTTTACAAT
GAATTTGTACATATAAATAGCAAAAAATAAAAAATGACGAAGTGGGTTCAATTGAACTCTCTTG
AACCAATGTAGGTCTGCCTTGCATATAGTGGCATCTTACCCCGTCTACTCTTCTGATTTATTCT
TTTTGTCCTAATTTATGACCGTGTTTAACTAGAAAAAACATTTAAAAATTTTTTTCTTTTAATA
TATAGTCTAAATAAGTTATAAATATTTGTATGCAGGGGCAGACCCGCATACAAATATAACATTG
TATATAAAGATCAAATTTTGATTTAATAAATATATATACAAGTATTGACATCTCTTGACACAAG
TTAAAAATCTAGTCTAATGGTTAAGGTGTTGTGAAAATTCCTTGAGGTTGATCATCTTATTGAT
GGGTATAACGAAAATTTTAAAATTAAACTAGTAATTTTCAATTAAGCTAAATTATTTGATAACC
TTTGCACAATTAACCCAAAAATATCACAAGTAATAAAATGAAAGAAACGGGAGCAGCTTGCCAA
GACCAAAAATTCCTTGGGAATTGTATGCATAAAATTATCAGTGGATGTAATTTCAAATACAAGT
TCCCAATAATCCATTGTTGCTAAACAAAATAAATCTACCTTTTTCCGTTCCAAGAAACACTACA
TCCTCTATTTTATAACTTTAAAAGTTAGAGCATCAAATACAAAATCTGCACTTGATTCTTCATA
ATTCCAGCAGTCTTTGCAGCTACTACTTGTGGTACAGATATACCAAGGAGAAGAGGAAGAAACC
ACCCATCTATCATACAAACAAAACAGAATCATACAAAATATTCTTGTAGATGAACAACAACCAA
ACAATATCTTAAATAGCACTTGCTTTTTAATATCCCGTGACAGAAAAGAGGTACGAAATAATCC
AACAGATCAGATCATAAAATAAGAAGACAAAACGTTGTCATCATATTGCGTGTATGTTTCATTT
GACTCCCCCCTCTTAACTCTAAACATTTTAAGAGGAGGATCCAACAAATACTTAACAGACAGTA
CATATTTAAGAATCTTTAGATTTTTCTAGGTTTCCAAATAAAATCTTGTAAAATTAATTTTGTA
ATCTAAGACTCCTCAAGAGATACTTTCACAATAGGACACCAACTGCAACAAATTTTCTGTATCC
TCAGTTTCCTGATATAACTAAGCAGCATTTACTACCATATCTGTACTTTTTAGGTGTTAAAAGT
TTGATAAATACCCTCATTAAATCAGATAACAAGACTCCTTATACTCTAAGTCTCGACAACTTGG
GGAGGAATTGTCTACACAGAAAGAAGGGGTTGGAACTACATATAGTACATTAAAAATATGCTGA
TGGTAAATCAATTGTAATGTGTAACAAAGAGATAGATAGAGAGAGAGAGAAAGAAAGAGTGGGG
GAGAGAAGTACCATAGAGAAGGATGCTCCATAATAAGGAAAAGCAGCTGTTATAAATCTCTCAT
ATTCATTATGTCTGAAGGGTCGAACAGGAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.116785767
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018