Detail information of BGIOSGA015084_circ_g.3


General Information
CircRNA Name BGIOSGA015084_circ_g.3
ID in PlantcircBase osi_circ_014375
Alias Chr04:21918777_21919755(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19382219-19383184  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA015084
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered BGIOSGA015084-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGCACTGTCAAGACGAACTTGATATCCGACCAAAGAATCCTTAGATCCAGGAGAAGATTCACA
CCTCTCACTAGACACTCTTTCAGCCACTGAAATGGCccttttctccatgctgttgaaagtatgc
tcctgatgcaggagaatccaaagcaagacagtactccattttctcataaacatcctcaaggaag
tgagatga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTTCTCCATGCTGTTGAAAGTATGCTCCTGATGCAGGAGAATCCAAAGCAAGACAGTACTC
CATTTTCTCATAAACATCCTCAAGGAAGTGAGATGAAACTGGATGTGTTCTCCCTTCAACATTA
ATTACAGGGCAATCTCCAAAATACCGAGCAAATAGGCTTGAATCAACAGTAGCAGACCTGAAGG
TAAAGCACATGGGGAAGTAAACATTAGATTCTCCTGATTATCAATGCAGTAAACAAAATTACAA
ACTGAAAAGAATAAAGACAAAAAAAAAAGAATTTGGTTTTACATGAGAATCACTTTCAACTTCC
TTCCTGGTTGATTAGAACGCTTCTCAACAAGACTCTTAAGAACAATCAACAGAAAGTCACCCTG
AAAACTGGGAAATCAGGATCATTCATGGACTTCCTCTACCATAGAAACAAAAGAAAACATTGTC
TGATTCGTAAAGGGAAAGGACACAAACATGTACATACCAAAATAGTACGTTCATGTACTTCGTC
TACTACTACATGAGTAACATCACTTAAATCATTGTTCCCCTGAAATTAGCATGAAAAGGAAATA
ATTTCTTAGGAACTATCATCACATGACTTGAAACACAAGTGGAGGGATGTTATAATGTTAGCTT
TACATGCAATAAAAATATTGCACAAGACAAACTATGTTAACATGACGGCACTACTTACAGATAA
TTTTCTAAGAAGGATACCGGTGGTACAGAACAGAAGCTTTGTCCTTTCATTCCTAAAAAAGTAG
AAAGAACAAAGTTGAATACATCATAGGGATCTTCAATGCAAAATTACAAGAATTTTTTCACACA
TATAATAATGTGAATATGAGAAAGACCAAATACCGAGCACTGTCAAGACGAACTTGATATCCGA
CCAAAGAATCCTTAGATCCAGGAGAAGATTCACACCTCTCACTAGACACTCTTTCAGCCACTGA
AATGGC
Conservation Information
Conserved circRNAs osa_circ_023867
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021