Detail information of BGIOSGA033162_circ_g.3


General Information
CircRNA Name BGIOSGA033162_circ_g.3
ID in PlantcircBase osi_circ_008542
Alias Chr10:20269439_20270462(MH63RS2), Chr10:20723232_20724255(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17295692-17296715  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRI2, CIRCexplorer2
Parent gene BGIOSGA033162
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033162_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA033162-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGAGCTGGATCCTTCAAATGAACAAGCTAAGAGATCACTGTTCCGACTGGAGCCACTGGCAG
CTGAGAAAAGGGAAAAGATGAAGGAAGAGATGATCGgaaagctagaagccaagcaaatgatgca
aaggcagaagggaacaagttttttggtgctggagaatatgagagggcattgtcgcaatatgaga
cagctttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAAGCTAGAAGCCAAGCAAATGATGCAAAGGCAGAAGGGAACAAGTTTTTTGGTGCTGGAGAA
TATGAGAGGGCATTGTCGCAATATGAGACAGCTTTGCAAATTGCTGCTGAGCTGGAATCTGCCG
AAGACATACGCTCCGCATGTCATTCAAATCGTGCTGTATGCTTCTTGAAGTTGGTAAGCCTTTC
TATTGGTCTTTAAATATGGAGGAAATAGATGATTTCCATTTGGTTGTCATCAGTAATAATTTTC
CTTATGTGAATTCGCAACAGGATCATGGTAGATGTGCTTGTTTCATTAATATGTTACCCCTAGT
CCCCTACCATCAGTATATTTACCCCTTTAACTATAGATTTCTCCTAAAAACCAGTTATCCTTCT
TAATGTACAGTGGCTACATGCCTATTTCTTTATTCCTTGTATAAACTTGCTTCCAAAGTATAAT
AAAGAGTTATGCCTGGATAAAATGCTAGGCTAGGCCTTTTTTTTTTCTGGTGTTTGGTAGTTGA
AATCAACCATTATTTCTTTAGTTTTACTTTAATGGCATTTTATTTTCTTTATCAGCAGATTATT
TTTCTCCAGTTGTTTTGTTTGAGTAATATCATATTATAATAAAACCACAATGCTAACACCCTGT
AATTTAGGGCAAATATGATGAAACAATCAAAGAATGCACCAAAGCACTTGAGCTGAATCCTTCA
TACTTGAAAGCCTTGCTCCGGAGGGGAGAAGCACATGAAAAGCTTGAACACTATGATGAAGCTA
TTGCTGGTTAGATATTATTCTCATAACGTGCTTTAGATTTAGAGACTATTTCACACTATTATTA
TTACTATTACCTGTGAGTATTTAGCTCCGATGCCATATTGTTTAAGTCCTCTTGTGCTGGGTGT
AATCCTCATCTCAGATATGAAAAAAATTATTGAGCTGGATCCTTCAAATGAACAAGCTAAGAGA
TCACTGTTCCGACTGGAGCCACTGGCAGCTGAGAAAAGGGAAAAGATGAAGGAAGAGATGATCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021