Detail information of AT2G02820_circ_g.1


General Information
CircRNA Name AT2G02820_circ_g.1
ID in PlantcircBase ath_circ_012614
Alias At_ciR4060, Ath_circ_FC1144
Organism Arabidpsis thaliana
Position chr2: 804914-805262  JBrowse»
Reference genome TAIR10.38
Type   u-circRNA
Identification method PcircRNA_finder, find_circ, CIRI-full
Parent gene AT2G02820
Parent gene annotation Transcription factor MYB88
Parent gene strand -
Alternative splicing NA
Support reads 5/6
Tissues leaf/whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02820.2:1
AT2G02820.3:1
AT2G02820.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGGGTTTTATCACCAGAAGGATGCGTCATTATGGTTGATCCTGATCCTGATCCTGAGCTATAT
TCAGAGCTTGCTGGTGAATCATGGAGATCAGGTTGCactttcagagaattgtgggcttgggatg
cctgctgctagagatctgaacaatggagtgacttgaacaggcgagttaaactcttcttcacccg
ggataggc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 349
Transcript exons: 804914-805262
ACTTTCAGAGAATTGTGGGCTTGGGATGCCTGCTGCTAGAGATCTGAACAATGGAGTGACTTGA
ACAGGCGAGTTAAACTCTTCTTCACCCGGGATAGGCACAGTCTCATTAGAGTTCTTTAACACAT
CATGACCAGTTGAGAGTAAACCCACTTGTTCCACAGTTGCATCAGACACAATCCCATTATCTTG
TAGTAACTCCCCACCATTTTGCTGATGTGATGTTGTCTGAGTATCAGACATAAGTTGTTGGGTT
TTATCACCAGAAGGATGCGTCATTATGGTTGATCCTGATCCTGATCCTGAGCTATATTCAGAGC
TTGCTGGTGAATCATGGAGATCAGGTTGC

Genomic sequence ACTTTCAGAGAATTGTGGGCTTGGGATGCCTGCTGCTAGAGATCTGAACAATGGAGTGACTTGA
ACAGGCGAGTTAAACTCTTCTTCACCCGGGATAGGCACAGTCTCATTAGAGTTCTTTAACACAT
CATGACCAGTTGAGAGTAAACCCACTTGTTCCACAGTTGCATCAGACACAATCCCATTATCTTG
TAGTAACTCCCCACCATTTTGCTGATGTGATGTTGTCTGAGTATCAGACATAAGTTGTTGGGTT
TTATCACCAGAAGGATGCGTCATTATGGTTGATCCTGATCCTGATCCTGAGCTATATTCAGAGC
TTGCTGGTGAATCATGGAGATCAGGTTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.444341292
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA