Detail information of Zm00001d015493_circ_ig.1


General Information
CircRNA Name Zm00001d015493_circ_ig.1
ID in PlantcircBase zma_circ_008624
Alias zma_circ_0002255
Organism Zea mays
Position chr5: 93614112-93618810  JBrowse»
Reference genome AGPv4.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACCGGCAGCGTCGTGACTCCCCACGACGACGCCCCGCCGAAGAGGCCATAATCGTGTCCCGA
GGGTGCAAAATTATATCGCGCACGGTGCTAGACGAGgtggaggccatgagatacaacatggtga
gcatcataccgcgattcgtgtagctgtttcaccacggccacagtcgatggcggatctgcggcgg
tggtgagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGAGGCCATGAGATACAACATGGTGAGCATCATACCGCGATTCGTGTAGCTGTTTCACCACG
GCCACAGTCGATGGCGGATCTGCGGCGGTGGTGAGCTCCGATGAGAAATTCCCCTGGGTTCGGT
CCATCAGCCCGCTCCGCCGGATAGAGGAACAATCATGGGCGAGTCTCAGGGGCGGTGGCCCGCA
ACGACGTTGCATCGAACGGCGACGGCTGCACCCCGCCAAAACACCGTCAGCCGCCCCAGCGACT
TGCTTCTTCTCCCTGCGCGAACACGGCACGGTGGGACGAGCGGCGAGCCCCAGCGTCAACAGCC
AGCGCCGGATCCTGGAGCGCCATCCACCCCGCATATTCCCAGATGGCGGCCATGCCAGAGCTTT
CCCCCATGGCCGGCATGCTGTTGACGACGAACGAAGGAGTTGCTTTTATCTGGTGACCCTAGCT
CCAAATTTTCTCGTACGACGCTGGCTACTGTCTCATTGACTTCAATAGCGCAGGTGATGGTTCG
GCTGCTCATATATATACTTGTGGACGGGACCGATTCCGGGCGCTCTACGGGCAGGACGTCCGAC
GGTTACGCGGTGGGTCTGTTACGATCTGCTATAGCGCCGGTTTGTTACGAGTCTACGAGATGTC
TCGATGTGGAAGAAAATATCTGGAGTGTGGGCCCCTGGATTAGAGATGTACAACCTCCCGGCTT
GGACGCACATGCGAGAGGTTGAAACGGACGACCACAAACTTCAGCCCAATTGGAAATGAAAATA
AAAAAAGAATAGATGAGAAGGTGTGGAGAAAAAGAAGTGTGGGCCGGTTTGAGATTATCTTTTC
CTATTCCATTTAATCCTTTCTTTTCTATTTTCCTTTGTGTTTCCATTTCTAATCTTAAAATTCA
AATGAAATTCGGATTTCAAATTTGCACCTCCATGCAACAACCAAATATCCAGCATGAGTTGTTT
GTCAAATATATTTGTGTATATATATTAATTATTTTGTTTATTTTGACAAATGCCTCAAATATGT
AGTGCACACACATAATTATTTTAAAGTAAATTCTAATGTGTAGTGTTTATTAAGGTATACTTTA
ACTTAAATACTCATAGGATATTCCTAAATGAGAAACGTTAACATGGAATAAATTATCATATAAA
TACCTCTATCTAATATTTTATTACAAAACACATGAATTTTAGAACTTGGAAGAAATTTTCCTAC
ATTCTTCAAAATTAGATTTGAGGTGTTACAAATTCTACCCCCCTTAAAAATAATCTCGCCCTCG
AGATTTGTAAGAAAAAAGGATACAGGAGGATTGGTTTGTGATTCGTCTTTTAGTCTATAATAGG
TTTAAGATCCGGAGTTTCATATATTTTTTATATAGACAATAGTGGGTGATTAGGAAGGCCTGGG
TATATTTGGGTATAACCACTTTATTATGCAGGATGAATGATATCTTTAAAGCATATATAGTTTT
GGGTAAGGAGTGGGGTAAGAAAAGACTCCATCCAAGATTGTGAATCTTGACTCATCTTGGTGAC
CTCACTTGATCCTTGAAGACTTGAGTTGGTGCTCATCCTTTCTTGATGAAGTTGATCATCTTCT
TCGGTCTTGTCTCATTGATTAGGAGTTAGTGTATATTATCGGGCTGGGGAATATGGTTAAGATA
GGTATGGATGAGATAGACTACATGATGTAGGTCAAAAGTTTGTTTGATGTTAGGTGGGGATAGG
CAGATCATGCAATCCATCAAGACTCTATTGGTTGGGTTGGTTTCTCATTCTTTATTTAGTGTAG
GGTGAACTAAGTTAAAACATGTGGAGAGGGTCTAATCTATTTCACAAGTATTAACTGGTCCATT
AAGTATCTCACTTTAGATTAGATCATATTAGGTTAGATGGGATCTAGATTAGATTGGTATGACT
AGCTTGACTAGATAAGATCAAATTAATTTGCATTAGATCATGGTTGTTAAACTAGGGTGGATAA
GTATGCTTATTAGGATAAGATGGATCCATAAAGATAAGATGGAATCTTTTGAGGTTAGTAAGAT
CTATTAGAATAAGATAAAATCTTTTCAAGATAAGATGAGTATCTTTTAAGATAAGATGAATCTA
TGAGTGTAAGATAGAATCTTTCAAGATTAGATGGATATTGTTAGGCTAGATACTTTAATGGGGG
ATAATTTAGTTTATGTAGTTATTTTTTATAAGCATTTTTTTCTATATGTATATGCAGATGTAAT
TGTGGACATTACTCCACAACTCATCACACTCAATCAAAAATCCAAATCAGACATGTATCACAAG
AACAAACATCCAAGCATACAAATATTGACAAAAATAGTTTTGATTTTGTTCCTAAGTGTAGGTC
TCCTATTCCTAGAGGTCACTTTAGGCATTGGATTTCAAAGTGTGAAACCCAAGTTTGTCTTTAG
AAGGAAAAGGTTAAGAATAATCAGAGTAAAGCAGAAATAGATGAGAATAGATTAAGAAAAGTTT
AGAAAGAATCAGAGTAGCAGAGGTAAGTAAATAAGGGTTATCCAGTTCTATCTAGGTTTCGTCC
TACAGTCAACATTCCTCTGATACCACTTCTGTCACACCCGGATTTCGGGGCACCAAGACCCGGG
CGCGAACATAATCACCAGGTGTGCTGGGACCAAGTCTCACACATATGATGAATAATGGCACAGG
ATCGAATGTCACATCTTTACTACATAACAGGAGTTCTATACAAAATAAATAAATAATTACATTA
TAAGGAGACAACGGTCCAGCAACCCAAAGTTGACTGGGAGACGACGGCCTAGACCTCTCACGAA
CTCGTCACAGCATCCTCCATGCGCCTCATCCTGCGGTACCTGTTCTTGACCTGTGGGGGGGGTG
TGAGACAGCAAGAGTGAGCTCACATACGTTCATCGCTCAGCAAGTTGTGGGGAATAATGTGCAT
GAACTCGCCAAAGGTGGGAGCTCACGTGAAGTGTAAGGCTTACCAAAGAGGATGGTTAGAGCTG
AGCATTGCTTTTAAAGTTGGTCAAAATTTTATTAGCAATTACTAAGTATAAGTAAATACCAACC
CAATTAAATAGTAGAACAGAAGTAACAACATCACCTGCGATGCAATGCATATGACAAATTGAAT
TTAAGTTCCATAAATTAATCATGTGAGTGTCCGAGCTGCTCATGACCGTGAGCACGGCTAGTAT
ACCAGTTTTACACTCTGCAGAGGTTGCGCATCTTTACCCACAAGTCATGTTACCCATCTGCCAA
GGGATTGCGACTTCCCATACACCTCTACCGAGGAGGCGAGGCAGGGTAACACTACGAGGCCTTT
ACAAAGTTCCACTAGCTTCAGAAAACCCGCTACAGTTTATAGGAAGCTCCAATGCAGGAATCCC
TTGCAGGACCGCCATCGCAGCAAAATCCTCCCGAGGGCCTCCCTACACTGACCACTCCCCTACT
GCCCTTGCCCCTTTCGGGTAAGGTAGTCTTCCACTAGCTTTCCTAATTAATCGGCCAAGGGCGT
CCCATTAAACCCTTGTGGTAGCACTGTTTTCCCGGGTGGTTCTCCATGTTCCAATTAACATAAT
GATCTTATCATGAACAGTAAATAGCAACTGATAACAAAAGTATGAATAATATGTATCTCAATGC
CCAAATCCACATATAGCACTAGCAAGTACTACCCAGAAAGTTTAGTGGTAAACAAGGCATAAAG
ATAGACAAACTAGGGTAACCTATTAGGTCCCATCAAATTAACCTATGCAGATCATTATGATTAA
TTAGAACATGAGTGGGTAAAAGAAGTGATCAAGGGCACAACTTGCCTAGGACTTGAGATTCTAG
GTACCAACTTGCTCTTCAGATGACATGTGTCCTCACTGCTAAACGTAGCAATACAAACAAACAT
GGCGTAGGCAAAATTAACATCACACCAAACATGTAAACAAAATACATAATAATAATCTACACAT
TATAACAAGATTCTAGGAACATGAATCATTAATTATGGAGTTATATATTTTAAGTTATGAATTT
CTAAAGGTTTTTATGTGTTTTGTACAAGATTAATTAGGATATCAATTTTAATGTAGCTTTCATG
TCAAAACAGTGCCACAAAATGATAAACAATAATATTACAAAATTATAAGAACTAGAATGGACTA
ATTTGAACTTAATATGAATTTCTATGAATTATACAAGTTTCTAGCATTCATTTTCTCATTAAAA
TTATTTTCTAATTACATTTATCTGATTTCCTAATTTCCTGGACTGGGCGCACTAATACAGTGAA
GGTCGGGGTTTAAATCGCAAAATATCCTAGACTCAGCCTTACTCGAGCTGGACTGCGGGTTGTT
TTTACTGAAACCTGAGGGCTATTATGCAAAAGAGGCACGGTGAAGAGTATGAGCGAATTCTGGC
CGCTAGATCGAAAATCTCTGGTCAGGATTTTAAAACCTCGCTATCGGACTCCATCCGCCGACCC
GACGATCAACAGCCCAGATGAGCTGGGGTTGAACCGGTATGGAGCCCCAAATCTTGGCCGTTGA
TGGACAGATCAATGGTCATCCTAGCCTTCCCCAAATCGGGTGGCCAGACAGCGGCGCACCGGCA
GCGTCGTGACTCCCCACGACGACGCCCCGCCGAAGAGGCCATAATCGTGTCCCGAGGGTGCAAA
ATTATATCGCGCACGGTGCTAGACGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.1277276
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b