Detail information of EPlOSAG00000016158_circ_ig.2


General Information
CircRNA Name EPlOSAG00000016158_circ_ig.2
ID in PlantcircBase osa_circ_034670
Alias Os_ciR11074
Organism Oryza sativa
Position chr7: 24583141-24583381  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAAGGATCATACCTAGATCCGAGAAGCCCCATCCAAGAATGTCCACAGCCCAAGCCTCCAGTC
CAGCCTCCTCCAACAACGGGTAGGTGTACCTCCACTctggtaaagatgctcccgtttggaggct
acatcacccggtggccgtttctctatgagacaatatccagaaacattcaggtgttgcaacttac
acctgtgt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 202
Transcript exons: 24583141-24583199,24583219-24583319,24583340-24583381
CTGGTAAAGATGCTCCCGTTTGGAGGCTACATCACCCGGTGGCCGTTTCTCTATGAGACGTGTT
GCAACTTACACCTGTGTGTGTCAAGCAAATCCATGAAACAAAAACCAACGACATGCAAAGAAGG
ATCATACCTAGATCCGAGAAGCCCCATCCAAGCCAGTCCAGCCTCCTCCAACAACGGGTAGGTG
TACCTCCACT

Genomic sequence CTGGTAAAGATGCTCCCGTTTGGAGGCTACATCACCCGGTGGCCGTTTCTCTATGAGACAATAT
CCAGAAACATTCAGGTGTTGCAACTTACACCTGTGTGTGTCAAGCAAATCCATGAAACAAAAAC
CAACGACATGCAAAGAAGGATCATACCTAGATCCGAGAAGCCCCATCCAAGAATGTCCACAGCC
CAAGCCTCCAGTCCAGCCTCCTCCAACAACGGGTAGGTGTACCTCCACT
Conservation Information
Conserved circRNAs osi_circ_007316*
PMCS 0.25651314
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015