Detail information of AT1G78940_circ_g.3


General Information
CircRNA Name AT1G78940_circ_g.3
ID in PlantcircBase ath_circ_010881
Alias 1:29683130-29683549
Organism Arabidpsis thaliana
Position chr1: 29683130-29683549  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G78940
Parent gene annotation Kinase with adenine nucleotide alpha hydrolases-like domain-cont
aining protein
Parent gene strand -
Alternative splicing AT1G78940_circ_g.2
Support reads 1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G78940.1:2
AT1G78940.3:2
AT1G78940.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGATCCAACGACTAAGTTCTCAATTGCAGAAGATGAAACATATTCGGTAATGGCTCGAACTTT
GTCTGCGTCTTCCAGCAAAATGTCTCGACAATTTATctgcagaattgggatggtcatggtactt
tggtgctttgtcaggagtatgtgggtgatgattgtcaatttcacattgctgcatcgaattttgg
taaggagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCAGAATTGGGATGGTCATGGTACTTTGGTGCTTTGTCAGGAGTATGTGGGTGATGATTGTC
AATTTCACATTGCTGCATCGAATTTTGGTAAGGAGCAGGACGTGATGCATTTCGTACTGAAGCA
ATTTTGCCTTTTGAAATGACATAAACATTGCAGAAATCTGGAGCTGATTTTGACACTGTTGTTG
GCAAATCCGTCTTGAATCTTCTGCTCAGAGTCATCAAAAACAGAATCCTTTGAACAAAAATCCA
AACTTTTTGTTACAGAATCTGAAAGAAGGTAACTTTAATTACCTCATGAAGCCATTACGTGATG
CAGATCCAACGACTAAGTTCTCAATTGCAGAAGATGAAACATATTCGGTAATGGCTCGAACTTT
GTCTGCGTCTTCCAGCAAAATGTCTCGACAATTTAT
Conservation Information
Conserved circRNAs NA
PMCS 0.18313
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020