Detail information of Pg_S2847.13_circ_ig.1


General Information
CircRNA Name Pg_S2847.13_circ_ig.1
ID in PlantcircBase pgi_circ_000182
Alias novel_circ_0000562
Organism Panax ginseng
Position chrPg_scaffold2847: 302519-307342  JBrowse»
Reference genome ginseng_v1
Type   ig-circRNA
Identification method find_circ, CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Pg_S2847.13_circ_ig.2
Support reads NA
Tissues root
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGACACCAGCTTTCTCTAGTTCAACCAAAGCCATATGAGTCGTGCTTGGCATTGCACGGTGAAA
TGGCAGTGATACTTCTGGCATACTTTTGCCTTCCCGcctgaagattcacgattacaatctttcc
cccagcacggagacattttagaggcaaattgcatgcaggagtgatctgcaaactacacaagagt
agctacgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGAAGATTCACGATTACAATCTTTCCCCCAGCACGGAGACATTTTAGAGGCAAATTGCATGC
AGGAGTGATCTGCAAACTACACAAGAGTAGCTACGCTCATGACCATTTGATTAAACATGCAAAG
AAGCATTATGAGAAAAGAAATGGTCATTGGACAGATATTTTCTACATATTATTTATAGAGAAAA
CAGCCAGCATAAATGAAGATTGCAAGCAACCAAGGTATAAAATAGAGGGAGTGCAATTTACACT
TCTATCTTCAGTGACTTTGATCCAAGATTTTTCCAAATTTTTGCAAAATAATTCGTCCCATCTC
ATCAGCTATCAAAGCGTCCCACTTTTCTCTTTGTTTTGTCGATGAAGATAATAAAATATATTTA
TTATAACAATAAGAATGCAAATATAGAAAAAAAGAAATGGGTAGGTTTTTTCTTTGAGCAGATG
GTGTTTTTTAAATCAAATGTGATAAGCAAACCCCACCAAGCCACTGGTTTGCAACAACTTCACG
ATCACTGTTACTCTATTTACTCGCTCATCCAATTTCACCAATAGAGAGCACTCTTACAAAAAAA
TCTTTCCTGAATCATATACAAGTAAGCCAATATTTTAAGAAACTGTCGGTGGTAATATTTCCTA
GGCTATCTGATCTCAAATGTATTCTTATAACCTGTGTTACTCGGACTCGCCCATTCTTGGTGAA
GTACCCGTGTCGACACGACACGACACGACACGGGTACGGGATTCGTACGGGATACGCCACAGAA
ATCCGGATACGGCTCTTTTAAAAGAAGAAGAAGAGTCGCGAGAGGAGGAAGAAGAAGAGTCGCG
AGAGGAGGAAACCCAGAGGAGAGGAGGAAGAAGAGAAGAGCCGTTGTGACATAGATCAGATCTG
CTTTTAAAATATCTCATGAAAAATTACAATAAGGTACCCTATAAATTCTAAATTTTTTTAATTT
AGCCCCCCAAGTTTTTGAAAGTTCAAAATAGCCCCTGGAAAATTACATATTAGTCCCTTTAGTT
TTATTTTTTTCCATTTATGCCCCTATATCTTTATATTTTTGCACTTCAATCCCAAGAGCAAAAA
AAACTTGGTGATACCATTAAAAACATTATTGTTAAAAAATCATAACATACCGTATCCCCGCACC
CGTGTCCAAATTCGGATCCATATCCGTGTATCCTCTATTTTTTGACTTTACGTGTCCGACACCT
AGATTCGTACCCGCACCCGACAACCGCAACCGAGTCCGAGTAACACAGCTTATAACCTAATTTC
TTATGGCACATTATTAACACTATTTACTCTTTTTCAGATACACAATTTTATTTTGCATAGAGAG
ATAAATTTACTAATTGGATGATCAAACTATGTGACTCTGTTCATTAAGTGACAACTACTGATTC
TAGTGGATACTTTTCACAAATTAGGTAACTAGCAAGAAAATTTTAATATCTAAAAGCCAAATAT
GAAGTTTATCATCACCCAGTGAGTAATGTGTCAACTGAAAGTTACTAGCAATCATACGAATTGC
TGAAGAGTACCTATGATTACAATCCAAGAAAATTTCACCATTTTTAATTCCTATTGTCATAGAC
ACCATAACATTTTCCATGCATGACTCATATGCAAACAAATCCCTTACATAACATCTAAGTAACC
AACTGGTACCAATTCTTAAAGAAATTAAAAGGACTGGAACATAAAAAATTAAAAATGGTATCTT
TACTAAACAGTTGATTAATTACCTTGTTCCTAAACATAACACGATGTCAGCCATTTTGCAGTGC
CTCTCTGCTAGGCTCATTTCCTTCAGGGGCAAGGCATCCTATAAAAAAGAGATTGAGCGAAAGT
GAGAGAGAGATTAGCACTACTTCCTTGATAAGGTGAAAATTTAGCCATCAAACCATGGCTTTTG
AGCCTTATTACCCAGAGGAACATTAGTTCAAGGGGTCTTTGTTGTTTCAAGTTTCAACAGCTCC
TTCATTAAGCAACTTCCCCTATATTCTTGAATGGCTAATTTAAATTACTCATGTTATGGAATAA
AGTATTCACATCCTTTCTCAGTTAGGAAATCTTCTATAAGTTGATATCGCTGTTTTTTTTCCTG
GCAACTAATTTACACATAATCATTAACAACAATTTTCTACTTAATAAGCATTGTAAGGAGTATA
ACTTCATTCTTCACTATCATGCAGGCTCAAGCATTTGTGCTGGGAGAAGATAAAAGTGACAAAA
GAGTTGAAGGTAGCGGCAGCCTTTAATTGTTTACTTGTCTAGAAACCATAGCTTTAAAAGGAGA
AGGCGAAGATGTTACTTTCGTTTCCACATTTTTTTTGGAATTGGTAAGCTTGGGCCGCTTGGCC
CCAAGTGTGTGGACTGGAACCACTTTCTTTTCCGAATTCTGAATTAAATATGTCATGACCAATG
TTAAAAAAGTATTCTGAGTGACAATATCATTTAATCAGGTTTTTTTCCAGCTAGTTTCAGAAGA
CCCCAATGTGAGAATTTTTGCTGCAGTAAAATTCAAAGTTGTCATGCATTCTAAACTACGAGTG
CAGACGCATTACCAAATTACTAGTTTGTAAGAAAATAATTCCTATAAGAGAATGAGCTGGCCCG
CCAAAAAAAAAGTCACTATGATAGTGCATCATAATTAATGCCTCATTCTTAGTTAGGTATGAAC
AAATGGCCCATACGGCAGCTGTTATAAGAAGATGAATTTAATTCAGCGGTCTGTTTTTTATTTT
ATTTTATTTTTTGATATTTAAAAAGTTGAAATTCCGAACTGATGGCAGCAGAAGCAGATTTAAG
CGGATTTCATGTTGCTTACGCAGAAGGCTCCAAGAGGGATACTTGTCAATTTCTAAACAAATCA
GAAATAGTCTGTGTATATCCAGAGCATATGTACTACCTCCCAGTCAAGAACCGTGTCCTTCAAT
TTAGCACCACAAACTGCATTAGAACAACGTCGTGATGTCTCCCTCAACCCAACAGATTCCACCT
CAAAATCCTGAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTAGGAAGGTTC
AGACACATCAAAAAGCAAAAAGAAAGATGTTGCAAATAAAGATCGAGTCTTACTCCACTCCACA
GGAAGGGCATATTTCCATGAAGGAGTTTCCATGTAACTCTGCAAGTTTCTCCCTTGGTATTCCA
GAGCGAAGATGGAGGCCATCAATATTCTAGCACATATAAGTAGTAGATATTAAACAGCATAGTC
AGAAAGGCAACCAGATATGCTCGTATCGTATGTAAACAATTGACAACTAATTTAGGGGAAGCCA
GCAGAGGATGCTAAATTTAATACTACAAATTTTCAGATGCTAAATTTTTTCCGTCCATAGATAA
TAAAATGACTTGTATAAATGTCATTTCGAATTCCAGTAAAATATGTCCGATAATGTGATTCTAT
TGTCAATCTAAGGCAGCACCCAGATATGCCCCTCTGCTATTGTATCCTTTTGTGCCTAATAATA
CTGAGTTTTACCTCCCAAAGCGAAACACTGTGTCCATATGTATTCTCCTATGAAAAGTACTTAT
TTGTCTTTTAAAGAATTCTTAGCGTTTTTGCCCTCATAAAGCCCAAATTAATTTGCAAAACAAT
GCTCAAGAGTGACAGTACTAGACCTATAAATAAATTGAGCTACTCAACCTTGACTCAACATGAA
CTGGCTCGACTTTGCTCAAGAGCTAAATATGCCAAGTTTGGGGCTTTATTTATACTCATATGTT
TAATGAGCCAAACTAGAGCCTCAGTGTACTCCATTTGATAATTGACCTACAAGAACTCGCTCAA
CTCGTTAAAATACAACTGCACTCATTAAACACAACTAACTTATACATCACATAAAAGAAGATCG
TAATCCCTCCATTTCATTTTCAATGTCATGGTTCAATTTTGATTGTTTTTTAAATTTGTGACAC
AAACATGCTTTTGAACCATGACATCCAAAATGGAACACAAAGATTATATAATTTGTAATATTTT
TATTTATATTATACAAACAAACAAACATAAAATTTCACTATATAAAAAAATTTAATTGATCTTA
ATGAGCTTTTAATAATCTTGAGCAGGACTTTTGTAGGTTCAACCTCAATAAATTTTTAAGTCAC
CCAAACTTGGCTAGACTCATTTGCAGGCCTAGACATCTATCTTACAATGTTAGTCAAGTGTGAA
TAGCTATACCATTAAAAGAAAAAAAAATTGCCAGATCAGTTTCTAATATTACTCAACATGATTG
ATATCTACCACCATAAGGCCATAACACATAGTAAATAACTTCGGTGCAACACCTGTCTGCCAAT
GACAAATTAGTCTCAAAATAGCATTTCCAATAATAAATTACATTGATAATTTCCTTCTTGTTGT
CAAGTTTGAACAATAGCATCTATCACTCAACAACAACGAAGTCAAATGCACACTAAATCAGAAA
CTAGAGAACTTAAAAGCCAAAAAAAAAAACTCGAGAAACTTCTATAAGAATGGCTTTAAGCTAA
TAAAAGAATATTAGGGAAGAGGACTGATTGAACTATCTCAAAGCTAATTAATTTCCCATAGATC
ATATAGCTAAAGAATGGAAAATGTAACACTACCTGGCTGATAACAAATTTTAAGACACCAGCTT
TCTCTAGTTCAACCAAAGCCATATGAGTCGTGCTTGGCATTGCACGGTGAAATGGCAGTGATAC
TTCTGGCATACTTTTGCCTTCCCG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Bian et al., 2021