Detail information of Os06g0622700_circ_g.5


General Information
CircRNA Name Os06g0622700_circ_g.5
ID in PlantcircBase osa_circ_031412
Alias NA
Organism Oryza sativa
Position chr6: 25043539-25043660  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method circseq_cup
Parent gene Os06g0622700
Parent gene annotation bZIP transcription factor, Endoplasmic reticulum stress response
(Os06t0622700-01);Active form of bZIP transcription factor, End
oplasmic reticulum stress response (Os06t0622700-02)
Parent gene strand +
Alternative splicing Os06g0622700_circ_g.3 Os06g0622700_circ_g.4 Os06g0622700_circ_g.6 Os06g0622700_circ_g.7 Os06g0622700_circ_g.8 Os06g0622700_circ_g.9 Os06g0622700_circ_g.10 Os06g0622700_circ_g.11 Os06g0622700_circ_g.12 Os06g0622700_circ_g.13
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   AA-GC
Number of exons covered Os06t0622700-01:1
Os06t0622700-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCGGAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGAatc
gtgtgcctactcccggtgcccggtctacccaaccgaaacccggtggctcgaagcagcg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 122
Transcript exons: 25043539-25043660
ATCGTGTGCCTACTCCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCG
GAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGA

Genomic sequence ATCGTGTGCCTACTCCCGGTGCCCGGTCTACCCAACCGAAACCCGGTGGCTCGAAGCAGCGCCG
GAAGAGATCTCGCGACGGTAACCGGAAAGAAGACAAGCAGTGAACAACAGCTAGAAGA
Conservation Information
Conserved circRNAs NA
PMCS 0.445372404
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016