Plant Circular RNA Database

Detail information of Os08g0343300_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os08g0343300_circ_g.2
					
						ID in PlantcircBase
						osa_circ_036798
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 15498397-15499929  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0343300						
					
						Parent gene annotation
						
							Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08
t0343300-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os08g0343300_circ_g.3 Os08g0343300_circ_g.4 Os08g0343300_circ_g.5 Os08g0343300_circ_g.6 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0343300-01:3

General Information
CircRNA Name	Os08g0343300_circ_g.2
ID in PlantcircBase	osa_circ_036798
Alias	NA
Organism	Oryza sativa
Position	chr8: 15498397-15499929 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0343300
Parent gene annotation	Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os08 t0343300-01)
Parent gene strand	+
Alternative splicing	Os08g0343300_circ_g.3 Os08g0343300_circ_g.4 Os08g0343300_circ_g.5 Os08g0343300_circ_g.6
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0343300-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ACATTTGCTTCTGCGTCTCATTCTGAACGGCAGGTGGGCATGAAATCCAAACGAGAGGATGATG
ATGAGGGTGTTGAATGGGAAGAAGAGCAACCTGCAGgaacaattgaagccattgcaagcacaac
ttaatagggtgaaggatcttcctgctcctgagtttgggagcttacaatcatgggaaagagctaa
cattggtg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 601
Transcript exons: 15498397-15498588,15499432-15499653,15499743-15499929
GAACAATTGAAGCCATTGCAAGCACAACTTAATAGGGTGAAGGATCTTCCTGCTCCTGAGTTTG
GGAGCTTACAATCATGGGAAAGAGCTAACATTGGTGCTTTTGGAACTGCTGACCCTAGTGCTGC
TGACTCGTCTAGGAACCCACAAGGGCAGTATGGTACACCAATGCCATACCTCGGAGAGACAAAG
GTTGAAGTTGCATTGTCTGGCACCGGTGTAAAAGATGAAGGTGCTGAATCAGGTACAAATGGTA
ACGGGCTGAAAGTCTTGCCTCCATGGATGATCAAACAAGGTATGAATCTTACAAAAGAACAAAG
AGGAGAGACCAGTAACTCATCAAATCTAGATGAAAAATCAGAAGTCAAGGATGAGAAAAAACAG
GACTCAAAAGAAGATGAGAAGAGTATACAGGATGAATACATAAAGGCTTATTATGAGGCCTTAA
GGAAAAGACAGGACGAAGAAGAAGCGAAAAGGAAGATACAGCAGGAAGGGGATACATTTGCTTC
TGCGTCTCATTCTGAACGGCAGGTGGGCATGAAATCCAAACGAGAGGATGATGATGAGGGTGTT
GAATGGGAAGAAGAGCAACCTGCAG
						
					

						Genomic sequence
						
							GAACAATTGAAGCCATTGCAAGCACAACTTAATAGGGTGAAGGATCTTCCTGCTCCTGAGTTTG
GGAGCTTACAATCATGGGAAAGAGCTAACATTGGTGCTTTTGGAACTGCTGACCCTAGTGCTGC
TGACTCGTCTAGGAACCCACAAGGGCAGTATGGTACACCAATGCCATACCTCGGAGAGACAAAG
GTAAGATTATTTTTATAATAGTAGTTTTTAGTATTGTTTGATTTTTTATTAGTACGCAATCAAC
AATGGCGCGTCTTGAAGCTTCCTGAGATTGTAGGTGGGTCCAACATGTCAGGTGATGGTGGATC
TAACGGGCAAGACTAAGGGAACATATCCTATGCACACAAGTTTCCCGTGCACACATATCTACAA
AGTCTCATATTCAAATTCATTATATTTTAGCCGTAACAAAAAAAGTGAAAAATCTGACAGTTTT
AAGGGTAAAAATCTGTCAGAATTGTCTTTTTTATTACGGCTAAAATATAATGAATTTGAAGATA
AAATTTCACATGTAGGTGTAATACTATTCGAAATATGTGTACAATTTTTTGTAGAATTTTTCGT
GACATTTGCTAGTTCGTGTGCACTGAGTGTGCACGGAGTGTGCACGAGAAGCTTGTGTGCATAG
GATATGTTCCCCAAGACTAAAACCTGTAGTTTTGTGATAACGGAAACACGAAATCTGTATTTTG
TGAGACAAGTTCGTAAATCTGTAATTTTGTGATAGATTGTGCGAAGTACCTGTAGTTTAGTGAA
ATTTACTAAAAAGAACTCTGAATCAAATCTAACATAGTTTCTTCTCGAATTTTAGCAAGGATTG
TTGTTTTCTTTAAGAAAAGTATTACTGATCTTCTGTAAAATAATGCGATGTGTTTATTTGTTAA
TCCTTACTAATGCATGTGTGTTTAATATGTGCTTACACATGAACGTCTCCTGTCTTGTATAGAT
GATACTCGGTACATTTTCATACATTTTCAATCATGCCTTGATCTAATCATGCTTTTTACTTATT
TTTCTTTTCAGGTTGAAGTTGCATTGTCTGGCACCGGTGTAAAAGATGAAGGTGCTGAATCAGG
TACAAATGGTAACGGGCTGAAAGTCTTGCCTCCATGGATGATCAAACAAGGTATGAATCTTACA
AAAGAACAAAGAGGAGAGACCAGTAACTCATCAAATCTAGATGAAAAATCAGAAGTCAAGGATG
AGAAAAAACAGGACTCAAAAGAAGATGAGAAGAGTATACAGGTCAGTTTGGGAATGAACATAAA
ATCTGATTTTACTTTTAAGATTTATTTTCTGTTCAGAGATACTTATGTTATTCTTTTATTGTGT
AGGATGAATACATAAAGGCTTATTATGAGGCCTTAAGGAAAAGACAGGACGAAGAAGAAGCGAA
AAGGAAGATACAGCAGGAAGGGGATACATTTGCTTCTGCGTCTCATTCTGAACGGCAGGTGGGC
ATGAAATCCAAACGAGAGGATGATGATGAGGGTGTTGAATGGGAAGAAGAGCAACCTGCAG
						
					

			
		

Sequences
Splice junction sequence	ACATTTGCTTCTGCGTCTCATTCTGAACGGCAGGTGGGCATGAAATCCAAACGAGAGGATGATG ATGAGGGTGTTGAATGGGAAGAAGAGCAACCTGCAGgaacaattgaagccattgcaagcacaac ttaatagggtgaaggatcttcctgctcctgagtttgggagcttacaatcatgggaaagagctaa cattggtg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 601 Transcript exons: 15498397-15498588,15499432-15499653,15499743-15499929 GAACAATTGAAGCCATTGCAAGCACAACTTAATAGGGTGAAGGATCTTCCTGCTCCTGAGTTTG GGAGCTTACAATCATGGGAAAGAGCTAACATTGGTGCTTTTGGAACTGCTGACCCTAGTGCTGC TGACTCGTCTAGGAACCCACAAGGGCAGTATGGTACACCAATGCCATACCTCGGAGAGACAAAG GTTGAAGTTGCATTGTCTGGCACCGGTGTAAAAGATGAAGGTGCTGAATCAGGTACAAATGGTA ACGGGCTGAAAGTCTTGCCTCCATGGATGATCAAACAAGGTATGAATCTTACAAAAGAACAAAG AGGAGAGACCAGTAACTCATCAAATCTAGATGAAAAATCAGAAGTCAAGGATGAGAAAAAACAG GACTCAAAAGAAGATGAGAAGAGTATACAGGATGAATACATAAAGGCTTATTATGAGGCCTTAA GGAAAAGACAGGACGAAGAAGAAGCGAAAAGGAAGATACAGCAGGAAGGGGATACATTTGCTTC TGCGTCTCATTCTGAACGGCAGGTGGGCATGAAATCCAAACGAGAGGATGATGATGAGGGTGTT GAATGGGAAGAAGAGCAACCTGCAG
Genomic sequence	GAACAATTGAAGCCATTGCAAGCACAACTTAATAGGGTGAAGGATCTTCCTGCTCCTGAGTTTG GGAGCTTACAATCATGGGAAAGAGCTAACATTGGTGCTTTTGGAACTGCTGACCCTAGTGCTGC TGACTCGTCTAGGAACCCACAAGGGCAGTATGGTACACCAATGCCATACCTCGGAGAGACAAAG GTAAGATTATTTTTATAATAGTAGTTTTTAGTATTGTTTGATTTTTTATTAGTACGCAATCAAC AATGGCGCGTCTTGAAGCTTCCTGAGATTGTAGGTGGGTCCAACATGTCAGGTGATGGTGGATC TAACGGGCAAGACTAAGGGAACATATCCTATGCACACAAGTTTCCCGTGCACACATATCTACAA AGTCTCATATTCAAATTCATTATATTTTAGCCGTAACAAAAAAAGTGAAAAATCTGACAGTTTT AAGGGTAAAAATCTGTCAGAATTGTCTTTTTTATTACGGCTAAAATATAATGAATTTGAAGATA AAATTTCACATGTAGGTGTAATACTATTCGAAATATGTGTACAATTTTTTGTAGAATTTTTCGT GACATTTGCTAGTTCGTGTGCACTGAGTGTGCACGGAGTGTGCACGAGAAGCTTGTGTGCATAG GATATGTTCCCCAAGACTAAAACCTGTAGTTTTGTGATAACGGAAACACGAAATCTGTATTTTG TGAGACAAGTTCGTAAATCTGTAATTTTGTGATAGATTGTGCGAAGTACCTGTAGTTTAGTGAA ATTTACTAAAAAGAACTCTGAATCAAATCTAACATAGTTTCTTCTCGAATTTTAGCAAGGATTG TTGTTTTCTTTAAGAAAAGTATTACTGATCTTCTGTAAAATAATGCGATGTGTTTATTTGTTAA TCCTTACTAATGCATGTGTGTTTAATATGTGCTTACACATGAACGTCTCCTGTCTTGTATAGAT GATACTCGGTACATTTTCATACATTTTCAATCATGCCTTGATCTAATCATGCTTTTTACTTATT TTTCTTTTCAGGTTGAAGTTGCATTGTCTGGCACCGGTGTAAAAGATGAAGGTGCTGAATCAGG TACAAATGGTAACGGGCTGAAAGTCTTGCCTCCATGGATGATCAAACAAGGTATGAATCTTACA AAAGAACAAAGAGGAGAGACCAGTAACTCATCAAATCTAGATGAAAAATCAGAAGTCAAGGATG AGAAAAAACAGGACTCAAAAGAAGATGAGAAGAGTATACAGGTCAGTTTGGGAATGAACATAAA ATCTGATTTTACTTTTAAGATTTATTTTCTGTTCAGAGATACTTATGTTATTCTTTTATTGTGT AGGATGAATACATAAAGGCTTATTATGAGGCCTTAAGGAAAAGACAGGACGAAGAAGAAGCGAA AAGGAAGATACAGCAGGAAGGGGATACATTTGCTTCTGCGTCTCATTCTGAACGGCAGGTGGGC ATGAAATCCAAACGAGAGGATGATGATGAGGGTGTTGAATGGGAAGAAGAGCAACCTGCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.243227109

Conservation Information
Conserved circRNAs	NA
PMCS	0.243227109

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15498566-15498425(+)
15499889-15498425(+)
15498414-15499849(-)
15499755-15499775(-)
						
						Potential amino acid sequence
						
							MPYLGETKVEVALSGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNLDEKS
EVKDEKKQDSKEDEKSIQDEYIKAYYEALRKRQDEEEAKRKIQQEGDTFASASHSERQVGMKSK
REDDDEGVEWEEEQPAGTIEAIASTT*(+)
MMMRVLNGKKSNLQEQLKPLQAQLNRVKDLPAPEFGSLQSWERANIGAFGTADPSAADSSRNPQ
GQYGTPMPYLGETKVEVALSGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSS
NLDEKSEVKDEKKQDSKEDEKSIQDEYIKAYYEALRKRQDEEEAKRKIQQEGDTFASASHSERQ
VGMKSKREDDDEGVEWEEEQPAGTIEAIASTT*(+)
MASIVPAGCSSSHSTPSSSSSRLDFMPTCRSE*(-)
MYSSCILFSSSFESCFFSSLTSDFSSRFDELLVSPLCSFVRFIPCLIIHGGKTFSPLPFVPDSA
PSSFTPVPDNATSTFVSPRYGIGVPYCPCGFLDESAALGSAVPKAPMLALSHDCKLPNSGAGRS
FTLLSCACNGFNCSCRLLFFPFNTLIIILSFGFHAHLPFRMRRRSKCIPFLLYLPFRFFFVLSF
P*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15498566-15498425(+) 15499889-15498425(+) 15498414-15499849(-) 15499755-15499775(-)
Potential amino acid sequence	MPYLGETKVEVALSGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSSNLDEKS EVKDEKKQDSKEDEKSIQDEYIKAYYEALRKRQDEEEAKRKIQQEGDTFASASHSERQVGMKSK REDDDEGVEWEEEQPAGTIEAIASTT(+) MMMRVLNGKKSNLQEQLKPLQAQLNRVKDLPAPEFGSLQSWERANIGAFGTADPSAADSSRNPQ GQYGTPMPYLGETKVEVALSGTGVKDEGAESGTNGNGLKVLPPWMIKQGMNLTKEQRGETSNSS NLDEKSEVKDEKKQDSKEDEKSIQDEYIKAYYEALRKRQDEEEAKRKIQQEGDTFASASHSERQ VGMKSKREDDDEGVEWEEEQPAGTIEAIASTT(+) MASIVPAGCSSSHSTPSSSSSRLDFMPTCRSE(-) MYSSCILFSSSFESCFFSSLTSDFSSRFDELLVSPLCSFVRFIPCLIIHGGKTFSPLPFVPDSA PSSFTPVPDNATSTFVSPRYGIGVPYCPCGFLDESAALGSAVPKAPMLALSHDCKLPNSGAGRS FTLLSCACNGFNCSCRLLFFPFNTLIIILSFGFHAHLPFRMRRRSKCIPFLLYLPFRFFFVLSF P(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0343300_circ_g.2

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