Detail information of BGIOSGA003812_circ_g.3


General Information
CircRNA Name BGIOSGA003812_circ_g.3
ID in PlantcircBase osi_circ_002154
Alias 1:24439019|24439191
Organism Oryza sativa ssp. indica
Position chr1: 24439019-24439191  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA003812
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered BGIOSGA003812-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGTGTCACGGAAACAGATGCTGGCAAGGCTGGATGTGTGCATGGGAGGGCGGGTGGCGGAGGA
GCTTATTTTTGGGGATAGCGAGgtgctcaccctgttcacaaagctaccatagttcccaggggaa
tggcccttggaatggtggcccaactcccggataaagatgagacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCTCACCCTGTTCACAAAGCTACCATAGTTCCCAGGGGAATGGCCCTTGGAATGGTGGCCCA
ACTCCCGGATAAAGATGAGACAAGCGTGTCACGGAAACAGATGCTGGCAAGGCTGGATGTGTGC
ATGGGAGGGCGGGTGGCGGAGGAGCTTATTTTTGGGGATAGCGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021