Detail information of AT2G37660_circ_g.3


General Information
CircRNA Name AT2G37660_circ_g.3
ID in PlantcircBase ath_circ_017109
Alias At_ciR1559
Organism Arabidpsis thaliana
Position chr2: 15796361-15796632  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ, CIRI-full
Parent gene AT2G37660
Parent gene annotation Uncharacterized protein At2g37660, chloroplastic
Parent gene strand -
Alternative splicing NA
Support reads 7
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G37660.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTCTCCATTGATCTTCTCCTTACTCTCCTTTGTCCTCACTAAACCCCTTGCCACGAACTGCT
CCGACCTCTCCTTCAATTTCTTATACACAATTTGTCctgttctggataagctccatcatcaaag
aagaactcaggtcttcctcctttactaggatcaaaaccgggcttcatctgcggaacagcgctag
taagaatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 272
Transcript exons: 15796361-15796632
CTGTTCTGGATAAGCTCCATCATCAAAGAAGAACTCAGGTCTTCCTCCTTTACTAGGATCAAAA
CCGGGCTTCATCTGCGGAACAGCGCTAGTAAGAATGACCAAAGCATCAATCCCTTCAACAGCAG
GAGCAATTGATGCAGTATCTCTAATATCTCCAATGAATACTTCATCCTCTCCATTGATCTTCTC
CTTACTCTCCTTTGTCCTCACTAAACCCCTTGCCACGAACTGCTCCGACCTCTCCTTCAATTTC
TTATACACAATTTGTC

Genomic sequence CTGTTCTGGATAAGCTCCATCATCAAAGAAGAACTCAGGTCTTCCTCCTTTACTAGGATCAAAA
CCGGGCTTCATCTGCGGAACAGCGCTAGTAAGAATGACCAAAGCATCAATCCCTTCAACAGCAG
GAGCAATTGATGCAGTATCTCTAATATCTCCAATGAATACTTCATCCTCTCCATTGATCTTCTC
CTTACTCTCCTTTGTCCTCACTAAACCCCTTGCCACGAACTGCTCCGACCTCTCCTTCAATTTC
TTATACACAATTTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.371152798
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015