Detail information of Os03g0291800_circ_g.5


General Information
CircRNA Name Os03g0291800_circ_g.5
ID in PlantcircBase osa_circ_019313
Alias Os_ciR2932
Organism Oryza sativa
Position chr3: 10150225-10150488  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method find_circ
Parent gene Os03g0291800
Parent gene annotation Similar to ESK1 (ESKIMO 1). (Os03t0291800-01);Similar to predict
ed protein. (Os03t0291800-02);Similar to ESK1 (ESKIMO 1). (Os03t
0291800-03)
Parent gene strand +
Alternative splicing Os03g0291800_circ_g.2 Os03g0291800_circ_g.3 Os03g0291800_circ_g.4 Os03g0291800_circ_g.6
Support reads 4
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os03t0291800-01:2
Os03t0291800-02:2
Os03t0291800-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTGACGATACGGTGTATGTGCTACGTGCAGGAGTACAACGCGACGGTGGAGTTCTACTGGGCG
CCGTTCCTGGTGGAGTCGAACTCGGACAACCCGCAGtgggagtcgatggtgtgcctggtccagt
ccgtgatccccaagggcaagaagacgctcaccaagttcgtcaacggcggcaacagcaacatctt
ctacgcac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGGAGTCGATGGTGTGCCTGGTCCAGTCCGTGATCCCCAAGGGCAAGAAGACGCTCACCAAGT
TCGTCAACGGCGGCAACAGCAACATCTTCTACGCACACGTACGTAGCAGGCATCAGCAACGTCA
CGTACGTACTCCGCTGTCGATCCGACATGATCTCCCCCTGACGATACGGTGTATGTGCTACGTG
CAGGAGTACAACGCGACGGTGGAGTTCTACTGGGCGCCGTTCCTGGTGGAGTCGAACTCGGACA
ACCCGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.232340309
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015