Detail information of Os06g0701300_circ_g.4


General Information
CircRNA Name Os06g0701300_circ_g.4
ID in PlantcircBase osa_circ_032215
Alias NA
Organism Oryza sativa
Position chr6: 29520391-29523095  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os06g0701300
Parent gene annotation Similar to ABC1 family protein. (Os06t0701300-01);Beta-lactamase
family protein. (Os06t0701300-02);Similar to ABC1 family protei
n. (Os06t0701300-03)
Parent gene strand -
Alternative splicing Os06g0701300_circ_g.3 Os06g0701300_circ_g.5 Os06g0701300_circ_g.6 Os06g0701300_circ_g.7 Os06g0701300_circ_g.8 Os06g0701300_circ_g.9
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0701300-03:5
Os06t0701300-01:10
Os06t0701300-02:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATCCCATTAGAAGTCAGCACAACAGCAGAAGAGATAACAAAAAAACTCTGAAACACCGTAGT
TAACAACTCTAGGCTCCCGGCCAGACGGTTGATCTTtggattgaaacgttgaacctccttttta
ttcattttcatcttttcttgaagtgccttgacatttcgttctctttggtcattcaatgtcttta
tgttctcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1318
Transcript exons: 29520391-29520489,29520580-29520708,29521234-29521355,29
521468-29521636,29521730-29521830,29521983-29522109,2952
2185-29522274,29522417-29522503,29522604-29522831,295229
30-29523095
TGGATTGAAACGTTGAACCTCCTTTTTATTCATTTTCATCTTTTCTTGAAGTGCCTTGACATTT
CGTTCTCTTTGGTCATTCAATGTCTTTATGTTCTCCTTTGCTTCATTTGCTGTAGTGGACTGCC
GAAAAAATACTGTAGCGATCTCCATAGCCTGCTCAGGCATGTCAACCCGCAGCTTAAGCCCCAT
CTCCGCAAAGGCTGACAGCAGTGCCACATGGTCTCCCTCAGCGCATGACAAAAACATCTTTGCT
AGTGCCTGCCTCATTGATTGAGATATGCGTTTAGTAAGCCCAAAATCAAGGAGAATCGGCTTGT
GTGGAGGTTCCTTGCTAACAAGAAAATTGCCAGGGTGAGGATCGCCGTTAAAGAAGCCATCAAC
GTATATTTGATGAGCATATGCACGGGTTATCTCCTCCACAAGTCTTTGCTTATCAACACCATAT
GCTTCTAACGAATCATTGTCATTCAAACGAATTCCATCCATATATTGCAAAATTAGAACCTTAT
CAGTTGACTGAATAACTTCTGGAATCAGTACGTCAACAGCACTAGAGACAGCACCACTCTCGCA
ATTGGTTTTTCGACTAAGATTACTGGAGACAGCCTTTGTGTTCTCTGCCTCATGGTTGAAATCA
AGTTCCTTTGGTGCCTCCTTGCACCATTCATCTATCATCGGGTTAAAATTATATTGAGGCTCTG
CCCATGCAATCCATTCAACTAATGATTTTGCATTCTTCAAATCCTCTAATATGATATCTTTGAT
ACCATCATGTTGGATTTTCACAACTACTTCTCTGCCATCTACAAGAGTTGCACGATGAACCTGT
GCTATTGATGCAGTTGCTAGAGGATCCAGCACAAAATTAGCAAACAGATCATTCATGGGTTTCC
CAAGTTCTTTCTCTATGGTTCCACGAACCTCTTCAAGAGGGCGAGGAGGAAGCGAGTCCTGCAA
CTGCTTGAGGACATTTATGTAGGGTTCAGGAAGCACATCTGCTCTTGTGGATAAATATTGTCCC
ATTTTCACCCATAAACCTTCTAACTCTATCATCAGGTTGAGAACACGACGAGCATTTCGCTCGT
GTGTTTTTGTCCATATAGCATCCTTTTTACCAGCGCCAACCCATTTAACTCTCTTCTGAACTGC
CTTATAGTCGAAGTATATAAACAAGGCCATGGAAAAGACTTTGAGGCGCCTGGTTAAGGTGTTT
CCCCATCCCATTAGAAGTCAGCACAACAGCAGAAGAGATAACAAAAAAACTCTGAAACACCGTA
GTTAACAACTCTAGGCTCCCGGCCAGACGGTTGATCTT

Genomic sequence TGGATTGAAACGTTGAACCTCCTTTTTATTCATTTTCATCTTTTCTTGAAGTGCCTTGACATTT
CGTTCTCTTTGGTCATTCAATGTCTTTATGTTCTCCTAAAGAAAAGTCATAACCAAACAGTTAA
TCCAAACTTCCAAATTAATACAAGAGGAGGGATACAGATTACAGTAGTGGTAGCCTCCTACCTT
TGCTTCATTTGCTGTAGTGGACTGCCGAAAAAATACTGTAGCGATCTCCATAGCCTGCTCAGGC
ATGTCAACCCGCAGCTTAAGCCCCATCTCCGCAAAGGCTGACAGCAGTGCCACATGGTCTCCCT
ACCCATTGACATGTTAAATATCAGAAATGTAGTTTAAGAAATTTAATCATAGCATGAGCAACTG
GTTCACAAACAGCAAAAGGTAGAATAAACCGAAGAACCCTATCTCACAAAATTTTAATTATCAA
ATTTTGACACGTCAAAATACTAGTGCATGTGGTCACTTAACGTTCCAGTGCACTTTCTAAGTCT
CAAAGTTGATTCAAGGAACACCAAAGCATAGTAGAGAAGAAAATAAAGATTAGTTCCAGATTCT
GTCTTTGTTTTCTTATAGCTTGTTAAATGTGATATTCATCTGCCACTTTGCAATACCACTTATG
AGTAAAGACTGAAAGATAGGACTAAACTAGGATACAAAAAGATCGGAAAGTAAACAAAAATCCA
TTCTTGTTATAATAAAAGATCGCATCTACTCCAATGGAAATGGCTGCAGCTTGTAGATGCCAAC
AAGACAACCATGTTTGATTAACTCCATTATTTGTTTCCTTGTGTATGTATTATTTAGAAGATCA
AAGTGTCAAACCTCAGCGCATGACAAAAACATCTTTGCTAGTGCCTGCCTCATTGATTGAGATA
TGCGTTTAGTAAGCCCAAAATCAAGGAGAATCGGCTTGTGTGGAGGTTCCTTGCTAACAAGAAA
ATTGCCTACAGAAAAATAATGCATTGTCAGCACAAATGAATTTGCAAGAATTACAGATGGAGAA
TAAAAAAATTGAGGTGACAGAAGATCTCTTCAAGGCACATAAAATTGAAATACCAGGGTGAGGA
TCGCCGTTAAAGAAGCCATCAACGTATATTTGATGAGCATATGCACGGGTTATCTCCTCCACAA
GTCTTTGCTTATCAACACCATATGCTTCTAACGAATCATTGTCATTCAAACGAATTCCATCCAT
ATATTGCAAAATTAGAACCTTATCAGTTGACTGGTACACAAAGAAGAATGGATTAGATGATCTG
TCAACTGAACCGGAAAAACTGACACGATGACAAACAGGATGAAGTAAAAGAACTCAGACCTGAA
TAACTTCTGGAATCAGTACGTCAACAGCACTAGAGACAGCACCACTCTCGCAATTGGTTTTTCG
ACTAAGATTACTGGAGACAGCCTTTGTGTTCTCTAAAATTAAGGATTTTATAGCATACATTATC
AGGATGATATGTTCATTAGTGACTAGACCTTTACTTTTAAAAAAAATATGGATGAGTCACAAGA
GCATGCATGTTCTTTTATATGGAGAGAGGAGTATGAGAACTGAAAGGGGTAATTACCTGCCTCA
TGGTTGAAATCAAGTTCCTTTGGTGCCTCCTTGCACCATTCATCTATCATCGGGTTAAAATTAT
ATTGAGGCTCTGCCCATGCAATCCATTCAACTAATGATTTTGCATTCTTCAAATCCTGACAACA
TTAAGAAAATGATATAGCAATCCTGCACATTTTACATAAGTCCGTTTTTTCAGAATAGAGGCAA
ACCTCTAATATGATATCTTTGATACCATCATGTTGGATTTTCACAACTACTTCTCTGCCATCTA
CAAGAGTTGCACGATGAACCTGTGCTATCTGACAAAAGTACATGAAGACTCGTATGAACATACT
ACCATGACAAAAAAAATTAGCAAGTTGCTCGAGGATTTCGTCAAAAAAAACATACTATGAATTT
CCATCAGATGAAAGAAGTTCATTCCAATATAACAGAACTTACTGATGCAGTTGCTAGAGGATCC
AGCACAAAATTAGCAAACAGATCATTCATGGGTTTCCCAAGTTCTTTCTCTATGGTTCCACGAA
CCTGAACATGAGAGACAAGAATTGAGTTAACGACTACGATTAGCTACATGTTAATATTTGGATT
GACTACAGATGAAGCAAAATTAGTTATGAGGATGAACCTCTTCAAGAGGGCGAGGAGGAAGCGA
GTCCTGCAACTGCTTGAGGACATTTATGTAGGGTTCAGGAAGCACATCTGCTCTTGTGGATAAA
TATTGTCCCATTTTCACCCATAAACCTTCTAACTCTATCATCAGGTTGAGAACACGACGAGCAT
TTCGCTCGTGTGTTTTTGTCCATATAGCATCCTTTTTACCAGCGCCAACCCATTTAACTCTCTT
CTGAACTGCCTGCTTGTACCTCAAGAAGATGTTAATCTGCTTCTACTAGTAGAATGGATTGAGA
CTTTTTATTGAAAGAACAGCATGAAGAAGTGATACAACCACACCTTATAGTCGAAGTATATAAA
CAAGGCCATGGAAAAGACTTTGAGGCGCCTGGTTAAGGTGTTTCCCCATCCCATTAGAAGTCAG
CACAACAGCAGAAGAGATAACAAAAAAACTCTGAAACACCGTAGTTAACAACTCTAGGCTCCCG
GCCAGACGGTTGATCTT
Conservation Information
Conserved circRNAs NA
PMCS 0.249936352
Functional Information
Coding potential Y
Potential coding position 29523006-29522933(-)
Potential amino acid sequence MGWGNTLTRRLKVFSMALFIYFDYKAVQKRVKWVGAGKKDAIWTKTHERNARRVLNLMIELEGL
WVKMGQYLSTRADVLPEPYINVLKQLQDSLPPRPLEEVRGTIEKELGKPMNDLFANFVLDPLAT
ASIAQVHRATLVDGREVVVKIQHDGIKDIILEDLKNAKSLVEWIAWAEPQYNFNPMIDEWCKEA
PKELDFNHEAENTKAVSSNLSRKTNCESGAVSSAVDVLIPEVIQSTDKVLILQYMDGIRLNDND
SLEAYGVDKQRLVEEITRAYAHQIYVDGFFNGDPHPGNFLVSKEPPHKPILLDFGLTKRISQSM
RQALAKMFLSCAEGDHVALLSAFAEMGLKLRVDMPEQAMEIATVFFRQSTTANEAKENIKTLND
QRERNVKALQEKMKMNKKEVQRFNPKINRLAGSLELLTTVFQSFFVISSAVVLTSNGMGKHLNQ
APQSLFHGLVYILRL*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017