Detail information of Os01g0728100_circ_ig.1


General Information
CircRNA Name Os01g0728100_circ_ig.1
ID in PlantcircBase osa_circ_003750
Alias NA
Organism Oryza sativa
Position chr1: 30364140-30364293  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method circseq_cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0728100_circ_igg.1 Os01g0728100_circ_ig.2 Os01g0728150_circ_igg.1 Os01g0728100_circ_ig.2 Os01g0728150_circ_igg.3 Os01g0728150_circ_igg.4 Os01g0728150_circ_g.1 Os01g0728150_circ_g.2 Os01g0728150_circ_g.3 Os01g0728150_circ_g.4
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   AT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACACGGCAGCCATTACACAATTCCATTTACTTCTCCCCGTTGGAAAGAATGCCTTCAGTTCAC
CACAATCTTAACCattgccaagccaacgaacatttcagacacacggcacacacaagtacagacg
aggtgaagtgagctgcaagcctgcaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 154
Transcript exons: 30364140-30364293
ATTGCCAAGCCAACGAACATTTCAGACACACGGCACACACAAGTACAGACGAGGTGAAGTGAGC
TGCAAGCCTGCAATACACGGCAGCCATTACACAATTCCATTTACTTCTCCCCGTTGGAAAGAAT
GCCTTCAGTTCACCACAATCTTAACC

Genomic sequence ATTGCCAAGCCAACGAACATTTCAGACACACGGCACACACAAGTACAGACGAGGTGAAGTGAGC
TGCAAGCCTGCAATACACGGCAGCCATTACACAATTCCATTTACTTCTCCCCGTTGGAAAGAAT
GCCTTCAGTTCACCACAATCTTAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.104978355
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016