Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d021893_circ_g.2 |
ID in PlantcircBase | zma_circ_009449 |
Alias | zma_circ_0002630 |
Organism | Zea mays |
Position | chr7: 165537147-165537906 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d021893 |
Parent gene annotation |
ARM repeat superfamily protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d021893_T004:3 Zm00001d021893_T005:3 Zm00001d021893_T002:3 Zm00001d021893_T008:3 Zm00001d021893_T003:3 Zm00001d021893_T011:3 Zm00001d021893_T001:3 Zm00001d021893_T010:3 Zm00001d021893_T006:3 Zm00001d021893_T009:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.253120593 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
165537878-165537866(-) 165537203-165537886(-) |
Potential amino acid sequence |
MPYLKSILMHATDKSNRMLRAKSMECISLVGMAVGKDKFRDDARQVMEVLMALQGAPMETDDPI TSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTVTSAESDDDIASDDDRITSRNTM MLSCHT*(-) MLQLLQLNQMTILHQMTIGSLQEIL*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |