Detail information of BGIOSGA021698_circ_g.5


General Information
CircRNA Name BGIOSGA021698_circ_g.5
ID in PlantcircBase osi_circ_016786
Alias Chr06:5321000_5321347(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr6: 6406309-6406656  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA021698
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA021698_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-GA
Number of exons covered BGIOSGA021698-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGCCCAGTCTTTGTTAGTATTATCGCCCTCTGGACAGCAATGATCAAACGAAGAGATGCCTTC
CTCCAGTTCTGAGCAAATTTGTGTATCAGTTAAGCTcaatgtattggatgcttgttttgcttaa
aaatatggtcccacaaaatccgcaactttctctctatgaatggatgaacataacatcgggaacc
atcctggc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATGTATTGGATGCTTGTTTTGCTTAAAAATATGGTCCCACAAAATCCGCAACTTTCTCTCTA
TGAATGGATGAACATAACATCGGGAACCATCCTGGCTGCAAGGACAAACATGGGATTTGACTGA
TCAAATTATGTTGTTCAGAGAGGGAGAGACTAAAGAAAAAATATTTTGAACCATACTTGAGAAA
GCATTTGCCAGAAATGCAATCTTCACCACAATTGTGGAAACCATTTTCTACTGAATCAGCCCAG
TCTTTGTTAGTATTATCGCCCTCTGGACAGCAATGATCAAACGAAGAGATGCCTTCCTCCAGTT
CTGAGCAAATTTGTGTATCAGTTAAGCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021