Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018927_circ_g.1 |
ID in PlantcircBase | zma_circ_009223 |
Alias | zma_circ_0002776 |
Organism | Zea mays |
Position | chr7: 9496438-9497169 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d018927 |
Parent gene annotation |
Protein FATTY ACID EXPORT 1 chloroplastic |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d018927_T001:2 Zm00001d018927_T002:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.125540061 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9497167-9496963(+) 9497159-9497125(-) 9496490-9497125(-) |
Potential amino acid sequence |
MAACASMNGKLDFPLLQTLRLSTARANMARPGATPKVRLAGLLQKRNPIRPMESKSPPKGIPRQ KSCIFAHFC*(+) MCVNADYTTPADSVATSEQAGGEAEATLETGGEAAATLEQTGGETEEPTIVAPANEYTEQEAAP QQKCAKIHDFCLGIPFGGLLLSMGLIGFLFWRSPASLTFGVAPGLAILALAVLSLNVWRSGKSS LPFILAQAAMDYNVRECRLYHSC*(-) MSGGAGSPAYRSYWRKQPWTTMCVNADYTTPADSVATSEQAGGEAEATLETGGEAAATLEQTGG ETEEPTIVAPANEYTEQEAAPQQKCAKIHDFCLGIPFGGLLLSMGLIGFLFWRSPASLTFGVAP GLAILALAVLSLNVWRSGKSSLPFILAQAAMDYNVRECRLYHSC*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |