Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G08830_circ_g.8 |
ID in PlantcircBase | ath_circ_001469 |
Alias | AT1G08830_C1 |
Organism | Arabidpsis thaliana |
Position | chr1: 2828380-2828581 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, CIRI2 |
Parent gene | AT1G08830 |
Parent gene annotation |
Superoxide dismutase |
Parent gene strand | + |
Alternative splicing | AT1G08830_circ_g.1 AT1G08830_circ_g.2 AT1G08830_circ_g.3 AT1G08830_circ_g.4 AT1G08830_circ_g.5 AT1G08830_circ_g.6 AT1G08830_circ_g.7 AT1G08830_circ_g.9 AT1G08830_circ_g.10 |
Support reads | 2 |
Tissues | aerial, leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G08830.2:2 AT1G08830.1:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.494209977 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2828555-2828578(+) 2828557-2828382(-) |
Potential amino acid sequence |
MQTLMTSERELPPSQSLIARFLLLDQTLLLVGLLLSMQTLMTSERELPPSQSLIARFLLLDQTL LLVGLLLSMQTLMTSERELPPSQSLIARFLLLDQTLLLVGLLLSMQTLMTSER(+) MDNNSPTNNRVWSSKRNLAISDCEGGSSLSEVIRVCMDNNSPTNNRVWSSKRNLAISDCEGGSS LSEVIRVCMDNNSPTNNRVWSSKRNLAISDCEGGSSLSEVIRVCMDNNSPTNNRVWSSKRNLAI SDCEGGS(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Chu et al., 2017;Zhang et al., 2019 |