Detail information of BGIOSGA007465_circ_g.4


General Information
CircRNA Name BGIOSGA007465_circ_g.4
ID in PlantcircBase osi_circ_011728
Alias Chr02:1622079_1623092(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr2: 1825576-1826589  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA007465
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA007465_circ_g.2 BGIOSGA007465_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA007465-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCCAAGATTGAGGAAGAGCTTGAATTGGAAATTGCCAAAAGTGAGCTGACGGAGCTTAAGAA
GGAATGTGTTGAAGCAATGGAGGTTCAACTAAAGAGgggcagatcttctatccgactctgagag
gattaaatataccatcgacacctttacaaagggcatccctgatgcacggacttacttgaatact
cttcagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGGCAGATCTTCTATCCGACTCTGAGAGGATTAAATATACCATCGACACCTTTACAAAGGGCAT
CCCTGATGCACGGACTTACTTGAATACTCTTCAGGAGATCAGGATAAAGTACATCTATTATCAT
TTTCACAATTTTCATCTTATGTTTTTCTCAGCCCCAAAATACCCTTGTAAAGAATTAAATCAAT
GTGATATTTGCCTACATAACAATTTTATTGCACTATTTGCTTGTCTGAATATTCTTCTGTTCAC
TTAATGTTACATAGGAGTGGCCTTATAGATGATATGGGTGCTGAGGCTATGATGATGGAAGCCC
TTGAGAAAGTTGAGAAGGAGATTAAGAAGCCACTTCTGAGGAGTGACAAGAAGAATATGGGTCT
CCTCTTGGCAGAGTTTGAGAAGATAAACAAAAAGTATTTATCTTCATCATTTTGTTATCAACTT
AAGTTTGAGATAGTTCAGATCATCATTTACACTGCTCGTCTACTCTCTAGAGATATACTTTTTC
TGAATATTTCAGTGAGAATAAAAATCCACATGATAGATCAAACGTGCAATTCCTTAAGCTGCTT
GCATGATAATTTTCTGGTTTCAAAGGCGATTCAGGGCATGTATAGTTATTTTATCTGACCTTGC
TCACTAGCAAGAGTTTTCTTGTTCGCTAACAAGGGTTAAGGGACCAAATATACTCTCAGATGAT
GGTGTAACCAACTGTAGCTTGTTTTTTACTCCGTACTTAGGTGATCGAGATCCATTATTGCTGG
CTTGCAGGGAAATATATTGATTTTTCTTCCTCCTGTGCATGCTAGATGTGTTATATATATTTTT
TATTAGTTGGACTAACCTTTTTCATGCTTTTTTGCTTTCCATTTCAAAATTTCAAATAGGCTTG
GAATCCGCAAGGAGGATCTTCCCAAGATTGAGGAAGAGCTTGAATTGGAAATTGCCAAAAGTGA
GCTGACGGAGCTTAAGAAGGAATGTGTTGAAGCAATGGAGGTTCAACTAAAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021