Detail information of BGIOSGA006714_circ_igg.1


General Information
CircRNA Name BGIOSGA006714_circ_igg.1
ID in PlantcircBase osi_circ_011528
Alias Chr02:9992927_9997804(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr2: 10738848-10743725  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA006714_circ_g.1 BGIOSGA006714_circ_igg.2 BGIOSGA006714_circ_igg.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TG-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAAGCTCATCCAAACGGAGCGTGGAGTAGTGGACCCCAGCCGCGGCAGCATCAAGAACCTCAT
CAACTGGTCTTGAACCCATATATTGTTCCAAGAACCcaatcgaatcaaccgatcagcatagaat
atgaaatcatgtgttgttgtggcagcatcccgtattattgtgtgcatacctcgtatctgaaaga
aagaagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAATCGAATCAACCGATCAGCATAGAATATGAAATCATGTGTTGTTGTGGCAGCATCCCGTATT
ATTGTGTGCATACCTCGTATCTGAAAGAAAGAAGAATTGAAATGCTAATATTTATATACGCTAC
AAAAATCCAGAAATAATTGCATTAACATTCAATATTATGAGATTATCAAAAAACAATCGGTTTT
ATAAGAAAAAACTGCAGCACATTTATGGTCACATGAAGTACCTGATAAGTAGTCTGAATGACAT
ACAAATTGGGGTGTACTTTACAGAGATCATGTTGACCAAGCTTAGTACGAATATGCTGAACTAT
TAAGTCAATTGCAACATCATTATCGCCACCTCGTGGGATGATAATATCAGCATACTTCTTGGTT
GGGAGGATGAAGTCTTCAAAAGCAGGCTTAACAAACTTTGAGTACTGTAAAACATAAGTAGAAT
TAAGTGGTTAATTTCAAAAAAGAATCATCAAGGAGATCTGACCTAACAACTAAGATTTGTAAAC
ATGTTAAATAAAAACAGCTCTAGTGAGTAAAAAGGTATGTGACCATGTAACCTGATCTAGCACA
GTTTTGATATCTCTACCCTTCTCAATGGTGTCACGTCGAATCCTCCTTGTTAATCGCACATCAG
CATCTGAAAATTCAATAGGATGAAATACAATAAAGGACAACACATTCACAGGGTTCAATGGATA
GCTACAAACTATTTTTCTTGTGAATTTACAGGCCCTGTCTATCAACATACGTAAGTTCAAGATA
GTGATAAATTCACAAGAGTGATTAGAAGGATGTCTCTCAAGTTCTTTAACTAGGGGGCATGCGA
AGTGCTAGCCTTGGTTGTTTCCTTCACAGCAGTTTATGCAATATACATTTGGCGACATTTGTGA
CTTCAAAAATAACTCTTTTCGTATTTAAAAAACAAATGAACAGTATTTCAAAATATGGAAATAA
CTAAAAAATTGTGAGTTGATACAAAAGAACTAGTAAATGAACAATGAAATCAGTGTTCTAAAAG
TCAGCCCTAGGTGCTGGGTAGCCCCCACAATCAGGTATTAGATGCCTATATGGTGCATAAGGTC
ACTCTTGGGTATTCCTGTTGCTATTTAGTGTTATAGTGTCTAGATTGTGTGTGATATGCTTGCT
AATTTCTTGGATTTTACTAGTACCAAGTGTAACTCACTGTCCAGGAAATAAGTGTACGACAGTA
AGAGTGGTCCCTCCGTCCCATTTTAAATGCAGCCATGATTTTCTGTGCTCAATTTTGATCGTCC
GTCTTATTTGAATTTTTTTAAAAAAAATCAAAAACATTAGTCACGCATAAAGTACTATTCATGT
TTTATCATCTAATAATAATAATAATAATACTAATTACAAAAAAAAATTAAATAAGACGAATGAT
CAAAGTTAGGCACGGAAACTCATGGTTGCACTTAAAATAGGACGGATGGAGTACTTCCAATTCA
AATCAAATAGGAGACAACAAAATTACATTATGCACATGTATAAACACAAATGTGGATAAAATAT
GGAAATAATCATACTGACCACACGTACAACTGATGATTACTGGTCATGGGCAAGAGCTAGAGAT
AATAAGACAGTTTGGCATGCAAATATTGATACCTGTGTCAACAAAGATCTTCATGTTCATCAAA
TCCCGGACACGTGAATCATGGAAAACCAGAATTCCTTCCAAAATAATTACATCTGAAGGATTGA
CCTGACAGAAGTCAAAATATTAGGGTTTCTCTGAAACATAAAGTAAAACAGATATGGATAAACA
AAGAGAAGAATAAACTGTAATCAGTGATCCAATTTTCATGGATAAAATAATACTATTTGAAATT
GTGAAACAATAAGGTGCTTAGTGTTTACTAGAAACTGCGCCAATTAAAACTAACTACAATATAT
TTTAACGAGGTTTATTTAAATATGTGCAACCATAGAGTTACTACATTTCAGATATACCACTACA
AGGTGGACTTCGATATGCCACTGCTAAGTAGGAAAATTCTGACATATGCCATTATGAAACAAAC
TGGACACAATGTCCTTGTCCTCTCCCTTCGTCCGTTCCATATCTACCGTCCCCAACTTCTCCCT
CATCAGCCATATCTACCATCCCCAACTTCTGCCTCATCGACAGGAAAGGTTGCTTTGCTGAAGG
GATGTACTACTTCAGTGACTAGAACTTTCACCAATAATGGTGTACCCAGCCATGGCCTGTACAA
TTGGCTTGTCGCCTTGGATAAGTTCTTTTGAGTATTTGTTGTTAGATATATGCAGTAATGTTAT
GTGACATAGTTACATGCTTCACAGAGCCCGACAAAAACCATGCAGATAAGCTACGAATTTTACT
GGAATATACTATCTCCATCCCAAAATATAAGGGATTTTGCCGATGTAATTATTGGATGGGCAAA
ATCCCTTATAATCACTCCCATGTCTTCACATTTCCCTTATATTTTGGGACGGAGTAAATATCAA
ATTATTGGATCTTTCGGCATTTCAAAACCATCACTTTTTAATGGAAAACTTCTGGTGGCAGATT
GTATTAATAGGCATATATGAGTTCCTAACCAAAGCTTAAGCACCTACAAAAGGGAAATGAAACT
TCTGTGTTCTGACTCCCTAGCTATCCAGCAGACCAGCACACAATTTTCAGCTACATTTCTCTTG
GACAACTCACAAGATCTGAACGAAGACAAAATGATAGTATGATACTCATGAACAATGAAGGTTA
GCTCAGGATTACTGCTATGACAATCCTTGTTCTTATGCTCATTTTTTTATAGAATACTTTTTTT
ATAGTTGTCGAGAGTTCAGTCATACTACCACTGTAGTGGTGGCTTAGATTCCAAGAGGGAATTC
AAGCTGTGAAGCCTCACCAGGATGAGACTGTGCTACTCCAACAATCACAGCAGCTACGGGAGAT
GGTGAAGTAGATGAGATATCTCTAATTTTACCTACTCGCTAGTGTCATATAATAAAGCAACAAC
TTTGTACTGGCATATCCCAAAAATTAGTAATTATGTAGCATGTATCTAAATAACCCTTTCTACA
AATATAGCTGCTATTTTAAGGAGAGTTCCTACTAACTTATAGATCACTCAGTTCATACAGCAGG
CATAGATTAGAATCTTAAGGCTTTATTAGAAACTCAGGACGAGGAAACCTTCAGTTTACCAGGT
GAGTAAATTATGATAGCACTGTAAAATAGTAGTACCTTTCTTGCACTTGCAACACTCTTATATG
TTTTGAAGTTGTAATTAGGAATGTCCACAGCCTTGCCATGTTTCAAGTTCTCCATACAAGAGAG
TAGTAACTCCGTATCAAATGCATCTGAAATAAGGACAGCAGCAGTAGCACCAAAATCAGTGCAC
AGCTCTAGTCACCAGCATACTTAGGCAAACTTCTTAGGAATATGCATCATACCTGGATGATCAA
AGTTATAATCATGAACATGGACCAATTCCTCATCAGACAACCCATAATAAAAAGACTCCTGCAA
AGAAAGATTGTAAACAAAATATGGCGGCAATATGATATTTAGCATAAAGGGGGCACATTCTGGT
GTCTAGCAATACAGCACGATATACTAATTTGTACAATCTGTAACAAGCATGTTCGTAGAAAAGT
TATCTTGTCATATTTGACACAGTATAAGTAATTAATGGAAATAGTATACAATAAACACATAATG
CTGGCTTTAAATAGAGCAAATTTTCAGATGCACGATCACAAAAGTAACAAGATAATAAGGTTAA
CAGTGCCAATACAGAAAAATAAAGTAGGAGCAACTAGAAACTTGCTATGGAAAGCAGGGGGTAC
TATTCGATCACAATCAGACAGTCATGCCTGCAAGCCTACCACTTACAGCAGAAATGAATTATGT
GAAGCAGTTAGCAATATAAGTATTATGATCATGGTTCATTGAAAGAGTGACAAGAAAAATCACT
TTTATAACATTAAGAGTTTCGCGATTGAAAAACTAAAAATACCAAAAAAGAAACAGTATATATC
AAGTATGATGTTACACAATATATCTAAGGCAGAGCAACAATTTCAGAAAACAGATACTAGGCAC
TGTGCCTTAACTGTATTAGCAAAGGTAAAGGTTGTACACTTGAAATATCATCTCGTGTGCATGA
TGCTAAACCATGAAATCAGGGAAAACATAATCCCATTTAGAGGATAAAATGATGTGTACTATAT
AACTATAGTATCCTAGATCCATGTAATGGATCCAAACATACCAATATCTAGGTTCTATTAACGA
CGAAAATACAAGGTTATTTTATTTGTGATGCGTGAAATATGGAACAAAGTAACTAAAAAAATGA
CAGTTCCATGGATGTATTTCACCTTAATACCACATATATTGAACTAAGAAATATACTATTAGTG
GCATATGGTATTCAAAAGAAATTCGGATGACACAAATACCACAAGGCAAAAGGGACAAACCTGA
GTAACAACAACTACACGCTGATCACGTAGCTGATCGATTATCATTTTGCATACAGTACTTTTGC
CTGAAGATGCACCCCCGGCAACACCTGTAATCCAAACCAAATCAGGGAATGAAACATCGGGAGG
CAAAAGGGCTACATTATGTACAACAGTCGATATTTACTGATTACTTGCAAAATAAACAGACAAA
AACAGCACTGAGCAAGTACTACTAACCAATGACAAATGGCTCCTGGTGCCCATTCTCCACCCCT
GAGGTCGTTGGTTGTTCCTCCCCTGTCATGGAGCCATTGATGTTAAGCTCATCCAAACGGAGCG
TGGAGTAGTGGACCCCAGCCGCGGCAGCATCAAGAACCTCATCAACTGGTCTTGAACCCATATA
TTGTTCCAAGAACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021