Detail information of BGIOSGA011089_circ_g.2


General Information
CircRNA Name BGIOSGA011089_circ_g.2
ID in PlantcircBase osi_circ_004691
Alias 3:8730042|8730628
Organism Oryza sativa ssp. indica
Position chr3: 8730042-8730628  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA011089
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA011089_circ_g.1 BGIOSGA011089_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA011089-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGTTGAGTCATCCATTCCAATTGCTATAATGTTGTTATCTTGAGGATGGAAAGCAAGAAACGT
TGCCGCCGGCGGCGGAGGCATAAAAGTTGTCATCGTctgcttcacgggttctaattttgtagtt
tcatatatggcaatctgggtctcatgcacaacaagaaagtgcaattgatcctgatggaactgaa
cacgtgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTCACGGGTTCTAATTTTGTAGTTTCATATATGGCAATCTGGGTCTCATGCACAACAAGA
AAGTGCAATTGATCCTGATGGAACTGAACACGTGTGTCTAAGATTATAGATGATGGACGACTTG
ATGGTATCTGTAACATTCTGCTCTTTAATTTATCCCACCCATCTGTGCTCCACACACATATCTA
CAAGGAGGAAAAGTATAAACAGTAAAGACAAACAGAAGTGGCTTGCTCTATGGTGTGAGTTGAT
AGTTCAGTAAATAACCTGCGCATCAGCTCCAGAAGAGACTAACACATTTAATACATTTGAAAAA
GCAAGTCCAGTAATTTTCTTAGAGTGCCCTCGAAGTTTGCTTTTGACCTGTGCAAAGAATCAAA
AAAAAAAATTGATTGAATCTTGTTCCATTTTTTATAAGAATAACGCAGAGCAATGCCATTAGAT
GTGCTAATACCTCATCAATTCGAACATTGTAGATTTGGATGGTTGAGTCATCCATTCCAATTGC
TATAATGTTGTTATCTTGAGGATGGAAAGCAAGAAACGTTGCCGCCGGCGGCGGAGGCATAAAA
GTTGTCATCGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 8730627-8730044(-)
8730576-8730056(+)
Potential amino acid sequence MTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRIDEVKSKLRGHSKKITGLAFSNVLN
VLVSSGADAQICVWSTDGWDKLKSRMLQIPSSRPSSIILDTRVQFHQDQLHFLVVHETQIAIYE
TTKLEPVKQTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRIDEVKSKLRGHSKKI
TGLAFSNVLNVLVSSGADAQICVWSTDGWDKLKSRMLQIPSSRPSSIILDTRVQFHQDQLHFLV
VHETQIAIYETTKLEPVKQTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRIDEVK
SKLRGHSKKITGLAFSNVLNVLVSSGADAQICVWSTDGWDKLKSRMLQIPSSRPSSIILDTRVQ
FHQDQLHFLVVHETQIAIYETTKLEPVKQTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQ
IYNVRIDEVKSKLRGHSKKITGLAFSNVLNVLVSSGADAQICVWSTDGWDKLKSRMLQIPSSRP
SSIILDTRVQFHQDQLHFLVVHETQIAIYETTKLEPVKQ(-)
MESKKRCRRRRRHKSCHRLLHGF*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021