Detail information of BGIOSGA018023_circ_igg.1


General Information
CircRNA Name BGIOSGA018023_circ_igg.1
ID in PlantcircBase osi_circ_015501
Alias Chr05:21789309_21790546(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 22129782-22131019  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA018023_circ_g.1 BGIOSGA018023_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTCGGAATTTTATGCAATATATGAACCAGAAGTAGCAGGAGAGGAAATAAGGATATTCCTCGC
TGACTTCAGCAGACATGGGTGATTAGGATCAAAATCcctttgagaaaccagcagagaccaattg
attgtcttccattttgtattcgtacatcacccaatcagtcctgttgcctttaggtgctttgcct
tcatgaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTGAGAAACCAGCAGAGACCAATTGATTGTCTTCCATTTTGTATTCGTACATCACCCAATC
AGTCCTGTTGCCTTTAGGTGCTTTGCCTTCATGAAAAATCAGTGTTTTCTTTGACCCAACAATG
CGAGAGTTAAGCTCAATCGTTCTATCTTTCCCACTTGTTTTCCAGTAACCATTTGGTGTGGAAC
GATTTGTCCTAGACCCATTAGGATATTTCTTGTCTCGTGGGCAAAAGAAGAACCATTCAAGATC
TCTGCTCTGGAGACAGGATTGAGCTGCAGAAGATTGATGCATACAAATTAGAGCAAAATTGTGC
ATAAAATTGAGAATAAATGACATGTTTTTCTTGAGAAATTGTCTTCGTGACCACTATTTTATCA
TTTATTTAAAGTTTCTAAAAACATCATAACATGAGAATTAGGAATTACCAGGAAGATCCCAGGG
AGCAAATTTATACAGTTCAACATCTGATATAGCTTGAATAAGAGGCTTCTTTCCCATAATCTTC
CTTTTCAAATAGTATGAAACAAGTTCAACATCTGTTGGATGAAAACGAAAGCCAGGTGGCAAGC
AAGTTTGAGCCATCACTGCAGTGTATATCTTGCCTTCAGCACCAATAAGACAACAGAGACCTTT
GTTTAAGGTACAAGCAGAAATGCTTCACCAAATAATGCCAATTCCAATAATCAACAAGTGATCT
AAGATTGACCAGTAAGGGAAATGTTTGAGTGCTCAAACAACAGAATTTAGGAGCACAAACAATC
AAGAGAACTTAGGAGAGAGCTGCTTTTGATGTTTGAGCACAGAAGGAACAAGAGAGGACTTCAG
AAGATTGTATTGCGTGAACACAGCAGGACGGTTCACGTTATGACAAGTGTCCTGAAGGGAGATC
AGGAGGTTGATCAGACCAAAAGGGAGATTGGTCCAACCTCAGAGAGAACAGAAGACGTGATTGT
TGAGAAACAATCTTCGGCAAGACTCAAGCAGAGTTTAGATCGAGCACTCAACCGACAAATGTTT
CTGAACCCAGATGAGAGAAAACTTGAGTCTTGCCAATTATGCTAACTACAACTGATTCACATGA
TAGGAAGTATTAGCACAAAACTCCAGGTGATCCACTTGTATCAAGTGAAATCTCGGAATTTTAT
GCAATATATGAACCAGAAGTAGCAGGAGAGGAAATAAGGATATTCCTCGCTGACTTCAGCAGAC
ATGGGTGATTAGGATCAAAATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021