Detail information of AT2G02810_circ_g.1


General Information
CircRNA Name AT2G02810_circ_g.1
ID in PlantcircBase ath_circ_012613
Alias NA
Organism Arabidpsis thaliana
Position chr2: 802132-802597  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G02810
Parent gene annotation UDP-galactose/UDP-glucose transporter 1
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G02810.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTAATGGGAACTTTAGTTTACGGAATAAGATACACTTTCCCTGAATACATGTGCACCTTTCTT
GTCGCTGGAGGAGTATCCATCTTTGCTCTTCTTAAGtgatcaagctctggtcaaatgctggtaa
cggtggagcaccatggtggacgtattggagtgcaggcattactaatacaattggtcctgccatg
ggaattga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGATCAAGCTCTGGTCAAATGCTGGTAACGGTGGAGCACCATGGTGGACGTATTGGAGTGCAGG
CATTACTAATACAATTGGTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCT
CAGGTAACTTTATACCTCATCAGTAGTAATACTCAGATTATGGTTTATGAACTGTTTCTTAGGT
AAATGATGGGTTGAATTCTGATCTTGCTTATTGCAGGTTTTGGCAAAATCGTCAAAAATGATTC
CAGGTAAGGTATCTATCTATTATGATCTCGAATAGATGATGATGAAACTCTATTCTAAGAAGAT
CTCTCTGTTTATCTTATTCATGATTTCCTTTTTGTGATGTAGTTATGCTAATGGGAACTTTAGT
TTACGGAATAAGATACACTTTCCCTGAATACATGTGCACCTTTCTTGTCGCTGGAGGAGTATCC
ATCTTTGCTCTTCTTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.175087678
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017