Detail information of ENSRNA049495147_circ_ig.2


General Information
CircRNA Name ENSRNA049495147_circ_ig.2
ID in PlantcircBase osi_circ_009504
Alias Chr01:18446983_18448014(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 18061894-18062927  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing ENSRNA049495147_circ_ig.1 ENSRNA049495147_circ_ig.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACCACTCTCCTTTTTCAGAAAATGGGGGTTTGGTTGTTGATCCATTAATCAAATAAATTAGGTC
GGAAGATCGAATCAAGAATTTCATTATATCTCTTTCccccttcttaccacaagcttttaataat
atggccgtgatctgtcattacgtgcgactatctccactatagaaagaaaaataagaaaggatca
aattttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCCTTCTTACCACAAGCTTTTAATAATATGGCCGTGATCTGTCATTACGTGCGACTATCTCCA
CTATAGAAAGAAAAATAAGAAAGGATCAAATTTTCTAGTATTTACTAGAAAAGGGGGCTTTCTA
CATAGGGATCGTCAAAACAACGATTTTGCCCTATCAGCTGTAGGAAGAAAGGACACTTCACGAG
AATCAAAATAGGAAGAAAGAAAGTATGGCCTATACTACTCTATGGATAGAGTTCTCAAATTGAT
AGAGAAAGCACCGTAAAGATCAATTAGTGACCGACTGGGTCGATACAACTAAAAAAAAACTGCT
TACTTATCCCATGATATGGGGCAAAATTTAGGAATCCGCTTATGTAATAGAGCCGATCCACTAA
GGGATTAAGCAGCGGTGTAGTATCAGATCCCAAAGATAGTAAGTTCTTTTTTCTTGCTTATGGG
GAAAAAGTCTTTTTCAAGGATTCTATAGAAATTTCATATATGAAACCGAGATAGTTACCTTTCA
GAAAATTCGGACGAAGGATATAGGTCTATCTATGCTTCATTTTTCTGCAGGTGGGAGAAAAGAT
CAAACTGATTATTGATCAAAATTTAGGGTTTGAAACTTAGGTAATTAACTTCTTCTACGTAACC
CAAGAAGAAATTGGATCGATTTTTGAGAAATCGAATTCAGTTAAGACAAGGGAAATTAAGATAG
CAATTTCTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAGGGGAAGGAACTACCTAT
TCCGACCGGGGAGAATAGGCCGTTCTACAGGGTGATTCAGAAATTGCAGAAGCTTGGTTTGATC
AAGCTGCTGAGTATTGGAAACAAGCTATAGCGCTTACTCCGGGAAATTATATTGAAGCACAGAA
CTGGTTGAAGATTACGAAGCGCTTTGAATTTGAATAAGACCACTCTCCTTTTTCAGAAAATGGG
GGTTTGGTTGTTGATCCATTAATCAAATAAATTAGGTCGGAAGATCGAATCAAGAATTTCATTA
TATCTCTTTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021