Detail information of BGIOSGA016052_circ_g.5


General Information
CircRNA Name BGIOSGA016052_circ_g.5
ID in PlantcircBase osi_circ_015184
Alias Chr04:11593720_11594690(MH63RS2), Chr04:12175351_12176321(ZS97RS2), Chr04:11593720_11594690(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 9702925-9703895  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRI2, CIRI2
Parent gene BGIOSGA016052
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016052_circ_g.1 BGIOSGA016052_circ_g.2 BGIOSGA016052_circ_g.3 BGIOSGA016052_circ_g.4 BGIOSGA016052_circ_g.6 BGIOSGA016052_circ_g.7 BGIOSGA016052_circ_g.8 BGIOSGA016052_circ_g.9 BGIOSGA016052_circ_g.10 BGIOSGA016052_circ_g.11
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-TA
Number of exons covered BGIOSGA016052-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATTTAATGGTAGCCTATAAGGGAAGGAAATTTTATTATCCAGCCAAAGGTTGATTTTGACAT
TAGTGCCAGCACTGTCGCAGGACTTCTTAAGCTTGGggtaatcttcgaaggtgtctatgctttg
catcctgctataaggaaatcactggatttatggattgcagttgtaagattttttaccctcaaaa
aaaagttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTAATCTTCGAAGGTGTCTATGCTTTGCATCCTGCTATAAGGAAATCACTGGATTTATGGATT
GCAGTTGTAAGATTTTTTACCCTCAAAAAAAAGTTGTAAGATTTTATTCAAATCTTGAAAAAAC
TGTTTATCTAGTTTGATTTTTTTTACATCATAAATATCTCCCTGGAAATTTACTGCATTCTGTC
TAGTAGGTTGGTGGAGTACATTCTCATCTTATTGCAAGAATACAGAGAGACAAGAATCGTGCAG
GCTTTTCTATTTCTCAGAGTGAAATTATGACTACCGTGTTTCCGCTATTTCAGCAATACATAGA
ACCACATCTTATCGATGCTCATGTTGGTACAAGAAACATGAATTTGACCTATTTGATATATATT
TATCATTTATGGCTTTCCATTATCATGTATTTAGTAACTTGTTTGGAGTCACGCAATGTTCCTT
CTCCATGTGCTTTGCAGCTTAAGATTCAAAATGACTTTGACCCTGTGCTCTCTCCTGAAAGCTC
ACTTTTCGTACTAAAAAGTAAAAAACAGGTAAGTTTGAGCTTTATATTGTTCATCTTATTATTA
CGTTGGTGATTATTTATCTATTTTTGTTTCATGAATAGGTATCTTATCAAGACATATTGAAAGT
ACTCGATGCTAGTAAAGCCTGCAGCTGTGTCCAGAATTTTACTGATGTGTATCTAAGACTTCCT
GGCATACCGTTGAGTGGACAGCTGACAGAAGGCGAATGTATTAGGGTCCGAATATGTGAAGGAA
GATTTGCACTGTTAATACGAGAGGTTAGTTTACCTTTTGCATACCATTTATCTTTGTGTTTTCA
TGAGACAGTCAATGACAGGCTACGTTTTTTTTCCTTTGTTCATTTAATGGTAGCCTATAAGGGA
AGGAAATTTTATTATCCAGCCAAAGGTTGATTTTGACATTAGTGCCAGCACTGTCGCAGGACTT
CTTAAGCTTGG
Conservation Information
Conserved circRNAs osa_circ_023306
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021