Detail information of ENSRNA049476493_circ_ig.20


General Information
CircRNA Name ENSRNA049476493_circ_ig.20
ID in PlantcircBase osa_circ_038220
Alias NA
Organism Oryza sativa
Position chr9: 7543-7862  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method circseq_cup
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000008552_circ_g.1 EPlOSAG00000008552_circ_ag.1 ENSRNA049476493_circ_ig.1 ENSRNA049476493_circ_ig.2 ENSRNA049476493_circ_ig.3 ENSRNA049476493_circ_ig.4 ENSRNA049476493_circ_ig.5 ENSRNA049476493_circ_ig.6 ENSRNA049476493_circ_ig.7 ENSRNA049476493_circ_ig.8 ENSRNA049476493_circ_ig.9 ENSRNA049476493_circ_ig.10 ENSRNA049476493_circ_ig.11 ENSRNA049476493_circ_ig.12 ENSRNA049476493_circ_ig.13 ENSRNA049476493_circ_ig.14 ENSRNA049476493_circ_ig.15 ENSRNA049476493_circ_ig.16 ENSRNA049476493_circ_ig.17 ENSRNA049476493_circ_ig.18 ENSRNA049476493_circ_ig.19 ENSRNA049476493_circ_ig.21 ENSRNA049476493_circ_ig.22 ENSRNA049476493_circ_ig.23 ENSRNA049476493_circ_ig.24 ENSRNA049476493_circ_ig.25 ENSRNA049476493_circ_ig.26 ENSRNA049476493_circ_ig.27 ENSRNA049476493_circ_ig.28 ENSRNA049476493_circ_ig.29 ENSRNA049476493_circ_ig.30 ENSRNA049476493_circ_ig.31 ENSRNA049476493_circ_ig.32 ENSRNA049476493_circ_ig.33 ENSRNA049476493_circ_ig.34 EPlOSAG00000023741_circ_ig.1 EPlOSAG00000023741_circ_ig.2 EPlOSAG00000023741_circ_ig.3 EPlOSAG00000023741_circ_ig.4 EPlOSAG00000023741_circ_ig.5 EPlOSAG00000023741_circ_ig.6 EPlOSAG00000023741_circ_ig.7 EPlOSAG00000023741_circ_ig.8 EPlOSAG00000023741_circ_ig.9 EPlOSAG00000023741_circ_ig.10 EPlOSAG00000023741_circ_ig.11 EPlOSAG00000023741_circ_ig.12 EPlOSAG00000023741_circ_ig.13 EPlOSAG00000023741_circ_ig.14 EPlOSAG00000023741_circ_ig.15 EPlOSAG00000023741_circ_ig.16 EPlOSAG00000023741_circ_ig.17 EPlOSAG00000023741_circ_ig.18 EPlOSAG00000023741_circ_ig.19 EPlOSAG00000023741_circ_ig.20 EPlOSAG00000019921_circ_g.1 EPlOSAG00000019921_circ_g.2 EPlOSAG00000008551_circ_ag.1 EPlOSAG00000019921_circ_g.2 EPlOSAG00000008551_circ_ag.3 ENSRNA049476498_circ_ig.1 ENSRNA049476498_circ_ig.2 ENSRNA049476498_circ_ig.3 ENSRNA049476498_circ_ig.4 ENSRNA049476498_circ_ig.5 ENSRNA049476498_circ_ig.6 ENSRNA049476498_circ_ig.7 ENSRNA049476498_circ_ig.8 ENSRNA049476498_circ_ig.9 ENSRNA049476498_circ_ig.10 ENSRNA049476498_circ_ig.11 ENSRNA049476498_circ_ig.12 ENSRNA049476498_circ_ig.13 ENSRNA049476498_circ_ig.14 ENSRNA049476498_circ_ig.15 ENSRNA049476498_circ_ig.16 ENSRNA049476498_circ_ig.17 ENSRNA049476498_circ_ig.18 ENSRNA049476498_circ_ig.19 ENSRNA049476498_circ_ig.20 ENSRNA049476498_circ_ig.21 ENSRNA049476498_circ_ig.22 ENSRNA049476498_circ_ig.23 EPlOSAG00000023740_circ_ig.1 EPlOSAG00000023740_circ_ig.2 EPlOSAG00000023740_circ_ig.3 EPlOSAG00000023740_circ_ig.4 EPlOSAG00000023740_circ_ig.5 EPlOSAG00000023740_circ_ig.6 EPlOSAG00000023740_circ_ig.7 EPlOSAG00000023740_circ_ig.8 EPlOSAG00000023740_circ_ig.9 EPlOSAG00000023740_circ_ig.10 EPlOSAG00000023740_circ_ig.11 EPlOSAG00000023740_circ_ig.12 EPlOSAG00000023740_circ_ig.13 EPlOSAG00000023740_circ_ig.14 EPlOSAG00000008519_circ_g.1 EPlOSAG00000008519_circ_g.2 EPlOSAG00000008550_circ_ag.1 ENSRNA049476502_circ_ig.1 ENSRNA049476502_circ_ig.2 ENSRNA049476502_circ_ig.3 ENSRNA049476502_circ_ig.4 ENSRNA049476502_circ_ig.5 ENSRNA049476502_circ_ig.6 ENSRNA049476502_circ_ig.7 ENSRNA049476502_circ_ig.8 ENSRNA049476502_circ_ig.9 ENSRNA049476502_circ_ig.10 ENSRNA049476502_circ_ig.11 ENSRNA049476502_circ_ig.12 ENSRNA049476502_circ_ig.13 ENSRNA049476502_circ_ig.14 ENSRNA049476502_circ_ig.15 ENSRNA049476502_circ_ig.16 ENSRNA049476502_circ_ig.17 ENSRNA049476502_circ_ig.18 ENSRNA049476502_circ_ig.19 EPlOSAG00000023739_circ_igg.1 EPlOSAG00000023739_circ_ig.1 EPlOSAG00000023739_circ_ig.2 EPlOSAG00000023739_circ_ig.3 EPlOSAG00000023739_circ_ig.4 EPlOSAG00000023739_circ_ig.5 EPlOSAG00000023739_circ_ig.6 EPlOSAG00000023739_circ_ig.7 EPlOSAG00000023739_circ_ig.8 EPlOSAG00000023739_circ_ig.9 EPlOSAG00000023739_circ_ig.10 EPlOSAG00000023739_circ_ig.11 EPlOSAG00000023739_circ_ig.12 EPlOSAG00000019899_circ_igg.1 EPlOSAG00000008518_circ_g.1 EPlOSAG00000008518_circ_g.2 EPlOSAG00000008518_circ_g.3 EPlOSAG00000008549_circ_ag.1 ENSRNA049476508_circ_ig.1 ENSRNA049476508_circ_ig.2 ENSRNA049476508_circ_ig.3 ENSRNA049476508_circ_ig.4 ENSRNA049476508_circ_ig.5 ENSRNA049476508_circ_ig.6 ENSRNA049476508_circ_ig.7 ENSRNA049476508_circ_ig.8 ENSRNA049476508_circ_ig.9 ENSRNA049476508_circ_ig.10 ENSRNA049476508_circ_ig.11 ENSRNA049476508_circ_ig.12 ENSRNA049476508_circ_ig.13 ENSRNA049476508_circ_ig.14 ENSRNA049476508_circ_ig.15 ENSRNA049476508_circ_ig.16 ENSRNA049476508_circ_ig.17 ENSRNA049476508_circ_ig.18 ENSRNA049476508_circ_ig.19 ENSRNA049476508_circ_ig.20 EPlOSAG00000023738_circ_ig.1 EPlOSAG00000023738_circ_ig.2 EPlOSAG00000023738_circ_ig.3 EPlOSAG00000023738_circ_ig.4 EPlOSAG00000023738_circ_ig.5 EPlOSAG00000023738_circ_ig.6 EPlOSAG00000023738_circ_ig.7 EPlOSAG00000023738_circ_ig.8 EPlOSAG00000023738_circ_ig.9 EPlOSAG00000023738_circ_ig.10 EPlOSAG00000023738_circ_ig.11 EPlOSAG00000023738_circ_ig.12 EPlOSAG00000023738_circ_ig.13 EPlOSAG00000023738_circ_ig.14 EPlOSAG00000023738_circ_ig.15 EPlOSAG00000023738_circ_ig.16 EPlOSAG00000023738_circ_ig.17 ENSRNA049476452_circ_g.1 ENSRNA049476452_circ_g.2 ENSRNA049476452_circ_g.3 ENSRNA049476452_circ_g.4
Support reads 12
Tissues root
Exon boundary   No-No
Splicing signals   AA-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCTTGAAAATCCG
GAGGACCGAGTACCGTCCACGCCCGGTCGTACTCATtgggtaagccgatcctaagggacggggt
aaccccggcagagagcgcgaccacgcgcgtgccccgaaagggaatcgggttaagatttcccgag
ccgggacg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 320
Transcript exons: 7543-7862
TGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGCGCGTGCCCCG
AAAGGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAAGTC
CGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCCTGG
AAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGG
TGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCAT

Genomic sequence TGGGTAAGCCGATCCTAAGGGACGGGGTAACCCCGGCAGAGAGCGCGACCACGCGCGTGCCCCG
AAAGGGAATCGGGTTAAGATTTCCCGAGCCGGGACGTGGCGGTTGACGGCGACGTTAGGAAGTC
CGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCCGCCAACCCTGG
AAACGGTTCAGCCGGAGGTAGGGTCCAGCGGCCGGAAGAGCACCGCACGTCGCGCGGTGTCCGG
TGCGCCCCCGGCGGCCCTTGAAAATCCGGAGGACCGAGTACCGTCCACGCCCGGTCGTACTCAT
Conservation Information
Conserved circRNAs osi_circ_009614 osi_circ_009616 osi_circ_009617 osi_circ_009615
PMCS 1.228382173
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2016