Plant Circular RNA Database

Detail information of Zm00001d008654_circ_g.5

			
						 General Information
					
						CircRNA Name
						Zm00001d008654_circ_g.5
					
						ID in PlantcircBase
						zma_circ_009557
					
						Alias
						Zm08circ00010
					
						Organism
						
							Zea mays						
					
						Position
						
							chr8: 16030666-16033193  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Zm00001d008654						
					
						Parent gene annotation
						
							WD40/YVTN repeat-like-containing domain;Bromodomain
							
						Parent gene strand
						+
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d008654_T008:4
Zm00001d008654_T024:4
Zm00001d008654_T032:4
Zm00001d008654_T051:4
Zm00001d008654_T010:4
Zm00001d008654_T009:4
Zm00001d008654_T038:4
Zm00001d008654_T012:4
Zm00001d008654_T001:4
Zm00001d008654_T043:4
Zm00001d008654_T020:4
Zm00001d008654_T021:4
Zm00001d008654_T023:4
Zm00001d008654_T041:4
Zm00001d008654_T006:4
Zm00001d008654_T003:4
Zm00001d008654_T056:4
Zm00001d008654_T014:4
Zm00001d008654_T055:4
Zm00001d008654_T011:4
Zm00001d008654_T059:4
Zm00001d008654_T019:4
Zm00001d008654_T022:4
Zm00001d008654_T002:4
Zm00001d008654_T015:4
Zm00001d008654_T013:4
Zm00001d008654_T004:4
Zm00001d008654_T047:4
Zm00001d008654_T018:4
Zm00001d008654_T017:4
Zm00001d008654_T007:4
Zm00001d008654_T016:4
Zm00001d008654_T034:4
Zm00001d008654_T005:4
Zm00001d008654_T025:4

General Information
CircRNA Name	Zm00001d008654_circ_g.5
ID in PlantcircBase	zma_circ_009557
Alias	Zm08circ00010
Organism	Zea mays
Position	chr8: 16030666-16033193 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI2
Parent gene	Zm00001d008654
Parent gene annotation	WD40/YVTN repeat-like-containing domain;Bromodomain
Parent gene strand	+
Alternative splicing	NA
Support reads	NA
Tissues	leaf, endosperm
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d008654_T008:4 Zm00001d008654_T024:4 Zm00001d008654_T032:4 Zm00001d008654_T051:4 Zm00001d008654_T010:4 Zm00001d008654_T009:4 Zm00001d008654_T038:4 Zm00001d008654_T012:4 Zm00001d008654_T001:4 Zm00001d008654_T043:4 Zm00001d008654_T020:4 Zm00001d008654_T021:4 Zm00001d008654_T023:4 Zm00001d008654_T041:4 Zm00001d008654_T006:4 Zm00001d008654_T003:4 Zm00001d008654_T056:4 Zm00001d008654_T014:4 Zm00001d008654_T055:4 Zm00001d008654_T011:4 Zm00001d008654_T059:4 Zm00001d008654_T019:4 Zm00001d008654_T022:4 Zm00001d008654_T002:4 Zm00001d008654_T015:4 Zm00001d008654_T013:4 Zm00001d008654_T004:4 Zm00001d008654_T047:4 Zm00001d008654_T018:4 Zm00001d008654_T017:4 Zm00001d008654_T007:4 Zm00001d008654_T016:4 Zm00001d008654_T034:4 Zm00001d008654_T005:4 Zm00001d008654_T025:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATGCATTTGGGATGCTGACTATTTGTGTTCTTCCTAACAGTTCTTCCTTGGAGACTATCGGCCT
CTCATTCGTGATACCAATGGAAGTGTCATTGATCAGacgtttgtgctagatgtgcatccgttca
atcctcgtatagcaatgagtgctggatatgatgggaagacgatcatctgggatgtatgctcctg
acttgatg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ACGTTTGTGCTAGATGTGCATCCGTTCAATCCTCGTATAGCAATGAGTGCTGGATATGATGGGA
AGACGATCATCTGGGATGTATGCTCCTGACTTGATGCCTTTCTTTCTGTTTTTCTTTTCACTAG
ATACCTTTGTTTGTGTCATAAAAAAGAAAAGAAAAACTAGATGCTTTTATTTTCTCAAATACGC
AAACCTGATAAACTAATCCAAAATTTCTACACCAGATATGGGAAGGGAAACCTGTTCAGATCTA
TGAAACAGGACAATTTAAACTAGTTGATGGGAAGTTCTCTCCGTAAGTATCATTATATACTTTC
TTGACAAGCTTTGTTTTTAACACTTTCCAAATCCCTTTGTATACTAAATTGATTTAATATGTAC
AGTATGCTTAACTTATGCTATGCAAGGATTCTAGGAATACCATGATCTAGTATAGCTCTTAGAT
TGCTACTTGATCTGATCAAGCTCCATAAGGGCATCTTTGGAAGCATGGTTTAGACGTGAAACCT
GTGTAAGGGCCTGTTTGATAGAGCTCCACTACCTGATTCTAAGTTCCAGCTCTCTTCTCTGGTG
GAGTGGTTTTGGGGTGTGTTTGTTGGGGGTGGGAAGTAATTTGGAGCTATTCATGGGAAGTGAC
CAGACTAACCGGCATTCGTTTTTTAATTCTCTTGAACCTTTAGGCATCATTTTACTTCTCTCTA
CAAGAATCGTGTGCAGAAGAAACTTTCTGGACGAGGTTAGGTTATTGAGTTGCAGTGGTCTCAT
AGCCTTGGATTTTCTTAGGTCCACATATAGTTAAGAATGAGTATAATTAGGAACACTTTAATTA
TCTTTGTATTGCATTTCTCTGACTGAATCGTAATAGGATTGTAGTATGAGTAGCCCCTTTTCCA
AAGTTGATTTATCACATTGATTAATTACTTAATGTTGTTAATGGAAGTGAATTAATTATGTGTC
ATGTTTTTTTATTTTATGCTGGATGGTCATTTAGGGATGGTACATCACTTATTTTATCAGATGA
AGTTGGGCGAGTATTCATTATTGGAACTGGGCAAGGAGAGTCCCAGAAAGATGCAAAATATGAT
CAGGTACATTAGCTGTTACTGGACTATCACATTCTTGGTGATTGCTTTGTGCAAACTAGTGTCT
GGGGTCAACCATACAAATTGCTACAATCCCAGCGACAACGTGAATCATTTGCTGAGTAGCAGAC
ATTGTAATTTATAATTCAGTTTTATCACGTATAAATTTCTGTAAGAGTGCAAATTTGGTGCCTA
GGGGGCTGGTGTTCTCAGCTAAAATACCATATTGCAATATTTAAAAAATCATCGCAAAAATCAT
GTATGCAATACACATAAGGTTAAGTATAGCTGCAATAATTCAGTTTGAAATTCATCCTACATGC
CAAGAAACAAAATAGGCAACCAATCAACCTGGCACTGTTCATCATGTGCTAACAGTGACATTTC
TGTTTTTTTAATATTAGTGTGAAAGATGAATTTCAAAAGGGTCACCAGGTCGTGGTGAGAGCTG
TCTGCATTTGCAGGGTCGCGAGTTTGAAGCAACCTCTCTGCATTTGCAGGGTCGCGAGTTCGAA
GCAACCTCTCTGCATTTGCAGGGGAAGGCTTGCCTCAGTTTATACCTTTTCGAGACCTCACGTG
TGAGGCACTGGGTTTACTCTAATGCCAAAGATGAACTTCAATCTCAATTGTTGCTGTCACACTT
AACTTCTGGTGTCGTACATACATGATTTTTGTGAAGATATTTGAAATACTGTAACATTGTATTT
TAGTCCTTTAGCTAACTAGGGCGCCATATGATTTTCCTTTCTATAATGTGGCTGGACTGTTGGG
TTAGTGTTATTTCACAAAATTAACCACACATGTGCCTATATCCCCACTAATCTACGTACTTCAT
AGAGTTTGCATGAATGCACTCAGATATGTTTACACTACATAGTGCCTCCTCCCCACCAACCCAC
CCTGCAAAGATAAAAGAGTGAATTTTATCAGCAGACCCTAAACCTGCCCTGCGGTCTCATCTGG
GGTCCACAACCTCTCAAATTGCCTATTCGGGACCTTAATAGTTGTCTTTGGCCTTTAGATTGGT
CTAACCAGGTCTAAATTGGTCCGCTGCCTATGTGGCATGCAACCATTGTGCCTCCTGCTTGGTG
GTAATCTGAATCATATTACTGCTCACCCCAGGGTAATACTTAACAGATTTGTTTAGTGCTCCCA
TGGCGTATCACATAGGTAGCTAGGACTGATTTGGACCCACCTGAAAACCATGATAAGTTTAAGG
TCTGATATGCAATTTGAGAGTTTGTTAATTTGTATGATAATGTGGGACAAGTTTAAGGGCCACT
TGTGAAATCTACCAATAATAGTAATAATAAACTATCATTTAGTTGAGTAACCATCTTTTTATGC
ATTTGGGATGCTGACTATTTGTGTTCTTCCTAACAGTTCTTCCTTGGAGACTATCGGCCTCTCA
TTCGTGATACCAATGGAAGTGTCATTGATCAG
						
					

			
		

Sequences
Splice junction sequence	ATGCATTTGGGATGCTGACTATTTGTGTTCTTCCTAACAGTTCTTCCTTGGAGACTATCGGCCT CTCATTCGTGATACCAATGGAAGTGTCATTGATCAGacgtttgtgctagatgtgcatccgttca atcctcgtatagcaatgagtgctggatatgatgggaagacgatcatctgggatgtatgctcctg acttgatg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ACGTTTGTGCTAGATGTGCATCCGTTCAATCCTCGTATAGCAATGAGTGCTGGATATGATGGGA AGACGATCATCTGGGATGTATGCTCCTGACTTGATGCCTTTCTTTCTGTTTTTCTTTTCACTAG ATACCTTTGTTTGTGTCATAAAAAAGAAAAGAAAAACTAGATGCTTTTATTTTCTCAAATACGC AAACCTGATAAACTAATCCAAAATTTCTACACCAGATATGGGAAGGGAAACCTGTTCAGATCTA TGAAACAGGACAATTTAAACTAGTTGATGGGAAGTTCTCTCCGTAAGTATCATTATATACTTTC TTGACAAGCTTTGTTTTTAACACTTTCCAAATCCCTTTGTATACTAAATTGATTTAATATGTAC AGTATGCTTAACTTATGCTATGCAAGGATTCTAGGAATACCATGATCTAGTATAGCTCTTAGAT TGCTACTTGATCTGATCAAGCTCCATAAGGGCATCTTTGGAAGCATGGTTTAGACGTGAAACCT GTGTAAGGGCCTGTTTGATAGAGCTCCACTACCTGATTCTAAGTTCCAGCTCTCTTCTCTGGTG GAGTGGTTTTGGGGTGTGTTTGTTGGGGGTGGGAAGTAATTTGGAGCTATTCATGGGAAGTGAC CAGACTAACCGGCATTCGTTTTTTAATTCTCTTGAACCTTTAGGCATCATTTTACTTCTCTCTA CAAGAATCGTGTGCAGAAGAAACTTTCTGGACGAGGTTAGGTTATTGAGTTGCAGTGGTCTCAT AGCCTTGGATTTTCTTAGGTCCACATATAGTTAAGAATGAGTATAATTAGGAACACTTTAATTA TCTTTGTATTGCATTTCTCTGACTGAATCGTAATAGGATTGTAGTATGAGTAGCCCCTTTTCCA AAGTTGATTTATCACATTGATTAATTACTTAATGTTGTTAATGGAAGTGAATTAATTATGTGTC ATGTTTTTTTATTTTATGCTGGATGGTCATTTAGGGATGGTACATCACTTATTTTATCAGATGA AGTTGGGCGAGTATTCATTATTGGAACTGGGCAAGGAGAGTCCCAGAAAGATGCAAAATATGAT CAGGTACATTAGCTGTTACTGGACTATCACATTCTTGGTGATTGCTTTGTGCAAACTAGTGTCT GGGGTCAACCATACAAATTGCTACAATCCCAGCGACAACGTGAATCATTTGCTGAGTAGCAGAC ATTGTAATTTATAATTCAGTTTTATCACGTATAAATTTCTGTAAGAGTGCAAATTTGGTGCCTA GGGGGCTGGTGTTCTCAGCTAAAATACCATATTGCAATATTTAAAAAATCATCGCAAAAATCAT GTATGCAATACACATAAGGTTAAGTATAGCTGCAATAATTCAGTTTGAAATTCATCCTACATGC CAAGAAACAAAATAGGCAACCAATCAACCTGGCACTGTTCATCATGTGCTAACAGTGACATTTC TGTTTTTTTAATATTAGTGTGAAAGATGAATTTCAAAAGGGTCACCAGGTCGTGGTGAGAGCTG TCTGCATTTGCAGGGTCGCGAGTTTGAAGCAACCTCTCTGCATTTGCAGGGTCGCGAGTTCGAA GCAACCTCTCTGCATTTGCAGGGGAAGGCTTGCCTCAGTTTATACCTTTTCGAGACCTCACGTG TGAGGCACTGGGTTTACTCTAATGCCAAAGATGAACTTCAATCTCAATTGTTGCTGTCACACTT AACTTCTGGTGTCGTACATACATGATTTTTGTGAAGATATTTGAAATACTGTAACATTGTATTT TAGTCCTTTAGCTAACTAGGGCGCCATATGATTTTCCTTTCTATAATGTGGCTGGACTGTTGGG TTAGTGTTATTTCACAAAATTAACCACACATGTGCCTATATCCCCACTAATCTACGTACTTCAT AGAGTTTGCATGAATGCACTCAGATATGTTTACACTACATAGTGCCTCCTCCCCACCAACCCAC CCTGCAAAGATAAAAGAGTGAATTTTATCAGCAGACCCTAAACCTGCCCTGCGGTCTCATCTGG GGTCCACAACCTCTCAAATTGCCTATTCGGGACCTTAATAGTTGTCTTTGGCCTTTAGATTGGT CTAACCAGGTCTAAATTGGTCCGCTGCCTATGTGGCATGCAACCATTGTGCCTCCTGCTTGGTG GTAATCTGAATCATATTACTGCTCACCCCAGGGTAATACTTAACAGATTTGTTTAGTGCTCCCA TGGCGTATCACATAGGTAGCTAGGACTGATTTGGACCCACCTGAAAACCATGATAAGTTTAAGG TCTGATATGCAATTTGAGAGTTTGTTAATTTGTATGATAATGTGGGACAAGTTTAAGGGCCACT TGTGAAATCTACCAATAATAGTAATAATAAACTATCATTTAGTTGAGTAACCATCTTTTTATGC ATTTGGGATGCTGACTATTTGTGTTCTTCCTAACAGTTCTTCCTTGGAGACTATCGGCCTCTCA TTCGTGATACCAATGGAAGTGTCATTGATCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.102271842

Conservation Information
Conserved circRNAs	NA
PMCS	0.102271842

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							16030709-16033190(+)
16030949-16030675(+)
16030741-16033192(-)
						
						Potential amino acid sequence
						
							MSAGYDGKTIIWDIWEGKPVQIYETGQFKLVDGKFSPDGTSLILSDEVGRVFIIGTGQGESQKD
AKYDQFFLGDYRPLIRDTNGSVIDQTFVLDVHPFNPRIAMSAGYDGKTIIWDIWEGKPVQIYET
GQFKLVDGKFSPDGTSLILSDEVGRVFIIGTGQGESQKDAKYDQFFLGDYRPLIRDTNGSVIDQ
TFVLDVHPFNPRIAMSAGYDGKTIIWDIWEGKPVQIYETGQFKLVDGKFSPDGTSLILSDEVGR
VFIIGTGQGESQKDAKYDQFFLGDYRPLIRDTNGSVIDQTFVLDVHPFNPRIAMSAGYDGKTII
WDIWEGKPVQIYETGQFKLVDGKFSPDGTSLILSDEVGRVFIIGTGQGESQKDAKYDQFFLGDY
RPLIRDTNGSVIDQ(+)
MGSSLRMVHHLFYQMKLGEYSLLELGKESPRKMQNMISSSLETIGLSFVIPMEVSLIRRLC*(+
)
MIVFPSYPALIAIRGLNGCTSSTNV*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	16030709-16033190(+) 16030949-16030675(+) 16030741-16033192(-)
Potential amino acid sequence	MSAGYDGKTIIWDIWEGKPVQIYETGQFKLVDGKFSPDGTSLILSDEVGRVFIIGTGQGESQKD AKYDQFFLGDYRPLIRDTNGSVIDQTFVLDVHPFNPRIAMSAGYDGKTIIWDIWEGKPVQIYET GQFKLVDGKFSPDGTSLILSDEVGRVFIIGTGQGESQKDAKYDQFFLGDYRPLIRDTNGSVIDQ TFVLDVHPFNPRIAMSAGYDGKTIIWDIWEGKPVQIYETGQFKLVDGKFSPDGTSLILSDEVGR VFIIGTGQGESQKDAKYDQFFLGDYRPLIRDTNGSVIDQTFVLDVHPFNPRIAMSAGYDGKTII WDIWEGKPVQIYETGQFKLVDGKFSPDGTSLILSDEVGRVFIIGTGQGESQKDAKYDQFFLGDY RPLIRDTNGSVIDQ(+) MGSSLRMVHHLFYQMKLGEYSLLELGKESPRKMQNMISSSLETIGLSFVIPMEVSLIRRLC(+ ) MIVFPSYPALIAIRGLNGCTSSTNV(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Han et al., 2020

circRNA

Detail information of Zm00001d008654_circ_g.5

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