Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d022010_circ_g.1 |
ID in PlantcircBase | zma_circ_009459 |
Alias | Zm07circ00087, zma_circ_0002555 |
Organism | Zea mays |
Position | chr7: 167914737-167922660 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d022010 |
Parent gene annotation |
Eukaryotic aspartyl protease family protein |
Parent gene strand | - |
Alternative splicing | Zm00001d022010_circ_g.2 Zm00001d022010_circ_g.3 Zm00001d022010_circ_g.4 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d022010_T002:7 Zm00001d022010_T001:7 Zm00001d022010_T004:7 Zm00001d022010_T005:2 Zm00001d022010_T007:6 Zm00001d022010_T006:6 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.129587883 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
167922434-167922659(-) 167914808-167922652(-) |
Potential amino acid sequence |
MVFGNGQKLSLTPENYLFRHSKVDGAYCLGVFQNGKDPTTLLGGIIVRNTLVTYDRHNEKIGFW KTNCSEMWERLHIGDAPSPAPSSDTISKTDLSPAPSPSSLPEFDVGLITVDMSINVTYPNLKPH LHELAELIAKELEIDSRQVRVMNITSQGNSTLIKWGIFPAGSDNAMSNATAMGIIYRLTQHHVQ LPENLGNYQLLEWNVQPLSRR*(-) MFSCLKILAIINCSSGMCSPCQEGDK*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Han et al., 2020; Ma et al., 2021b |