Plant Circular RNA Database

Detail information of Os05g0155601_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os05g0155601_circ_g.5
					
						ID in PlantcircBase
						osa_circ_026646
					
						Alias
						Os_ciR4885
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 3253934-3254971  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os05g0155601						
					
						Parent gene annotation
						
							Importin alpha-1b subunit. (Os05t0155601-00)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os05g0155601_circ_g.6 Os05g0155601_circ_g.7 Os05g0155601_circ_g.8 Os05g0155601_circ_g.9 Os05g0155601_circ_g.10 Os05g0155601_circ_g.11 						
					
						Support reads
						4
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0155601-00:5

General Information
CircRNA Name	Os05g0155601_circ_g.5
ID in PlantcircBase	osa_circ_026646
Alias	Os_ciR4885
Organism	Oryza sativa
Position	chr5: 3253934-3254971 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os05g0155601
Parent gene annotation	Importin alpha-1b subunit. (Os05t0155601-00)
Parent gene strand	-
Alternative splicing	Os05g0155601_circ_g.6 Os05g0155601_circ_g.7 Os05g0155601_circ_g.8 Os05g0155601_circ_g.9 Os05g0155601_circ_g.10 Os05g0155601_circ_g.11
Support reads	4
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0155601-00:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGACACACCTGGAGTTGGGGATAATCCTCACGTTGGAGGAAGGCAATAAAGCGAGGCACCACCC
CTGTGTTGATCACCTCCTCAATTGGAGGACTCCGCTctgagtctgcatgtcatccccagtgacg
atgttacccaccgtgcgcaaagctggaatgagcactgaagccgaaggatgcctgaattaagcaa
cagcagtt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 242
Transcript exons: 3253934-3253983,3254653-3254762,3254890-3254971
CTGAGTCTGCATGTCATCCCCAGTGACGATGTTACCCACCGTGCGCAAAGCCTGCTCACGGACA
TCCTCACTGGGGGAGCTAAGCAGTTTGACAAAGATGGGCACAGCACCAGACTCAACTACCACTT
TGGTGTTATCTGATGTGCCTGATGCAATGTTAGGATAATCCTCACGTTGGAGGAAGGCAATAAA
GCGAGGCACCACCCCTGTGTTGATCACCTCCTCAATTGGAGGACTCCGCT
Transcript length: 653
Transcript exons: 3253934-3254012,3254112-3254275,3254364-3254549,3254654-
3254785,3254880-3254971
CTGAGTCTGCATGTCATCCCCAGTGACGATGTTACCCACCGTGCGCAAAGCTGGAATGAGCACT
GAAGCCGAAGGATGCATGAGAAGTTCCACAAGCCTTGGGAACACTCCTGATTCTATCACAGCTT
GGATCTTATCATTAGTTCCATCAGACAAATAAGAAAGAGCCCAGCAGGCATCAGTCAGGACCTC
CTCGTCCTGAGAATGGATGAGGCGCTGCAGTGCAGAAAGCGCTGGTTTGACCTGCTCAAAATTA
GGCTGAGGCTTCCCACGGCAGAAGTTTGACAGTGTCCATGTGGCATTCCTGAGCATTGAGAGCT
TGGCGTGCTCATTAAGCTGTTGCAACAATGGGTATAACCCACCACTTGCAAGCACCAGGTCACG
GCATTTTGGTGAGTCACCAGCCACATTTCCCAGAGCCCATACAGCCTGCTCACGGACATCCTCA
CTGGGGGAGCTAAGCAGTTTGACAAAGATGGGCACAGCACCAGACTCAACTACCACTTTGGTGT
TATCTGATGTGCCTGATGCAATGTTAGTGAGTGCCCATGCAGCCTCAAACTGGAGTTGGGGATA
ATCCTCACGTTGGAGGAAGGCAATAAAGCGAGGCACCACCCCTGTGTTGATCACCTCCTCAATT
GGAGGACTCCGCT
						
					

						Genomic sequence
						
							CTGAGTCTGCATGTCATCCCCAGTGACGATGTTACCCACCGTGCGCAAAGCTGGAATGAGCACT
GAAGCCGAAGGATGCCTGAATTAAGCAACAGCAGTTCAGACTTCAACAATTTGTTATGAAATTC
AGACTTCAGCATAGCGCAAGGGTTACATGAAGAGAAAAGGAGGCACTTACATGAGAAGTTCCAC
AAGCCTTGGGAACACTCCTGATTCTATCACAGCTTGGATCTTATCATTAGTTCCATCAGACAAA
TAAGAAAGAGCCCAGCAGGCATCAGTCAGGACCTCCTCGTCCTGAGAATGGATGAGGCGCTGCA
GTGCAGAAAGCGCTGGTTTGACCTGCTCGAACACAAAAAATCAACAAAACCATCCTAATGATAA
AAACTTAGGTCAGTGCATCAAAGTAGAAGGTAGCCCAGAATTAAACCTGCTCAAAATTAGGCTG
AGGCTTCCCACGGCAGAAGTTTGACAGTGTCCATGTGGCATTCCTGAGCATTGAGAGCTTGGCG
TGCTCATTAAGCTGTTGCAACAATGGGTATAACCCACCACTTGCAAGCACCAGGTCACGGCATT
TTGGTGAGTCACCAGCCACATTTCCCAGAGCCCATACAGCCTGCGAAGATTTAAAAAAAAAGAG
AGAGAAATGTAACAATCTAAACATCATGCAGTACAGGTCCCTCAGGGAAATTATAATTCTTCTG
TTAACTGTTGACATACCTGCTCACGGACATCCTCACTGGGGGAGCTAAGCAGTTTGACAAAGAT
GGGCACAGCACCAGACTCAACTACCACTTTGGTGTTATCTGATGTGCCTGATGCAATGTTAGTG
AGTGCCCATGCAGCCTCAAACTGCGCAAGAAAACCCATGGGGGATGGTTAGCTTTAGCAAATGG
TTCCTAGTTAACACTATTAGTAAATTAAATCACTGTGACTGTTGACACACCTGGAGTTGGGGAT
AATCCTCACGTTGGAGGAAGGCAATAAAGCGAGGCACCACCCCTGTGTTGATCACCTCCTCAAT
TGGAGGACTCCGCT
						
					

			
		

Sequences
Splice junction sequence	TGACACACCTGGAGTTGGGGATAATCCTCACGTTGGAGGAAGGCAATAAAGCGAGGCACCACCC CTGTGTTGATCACCTCCTCAATTGGAGGACTCCGCTctgagtctgcatgtcatccccagtgacg atgttacccaccgtgcgcaaagctggaatgagcactgaagccgaaggatgcctgaattaagcaa cagcagtt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 242 Transcript exons: 3253934-3253983,3254653-3254762,3254890-3254971 CTGAGTCTGCATGTCATCCCCAGTGACGATGTTACCCACCGTGCGCAAAGCCTGCTCACGGACA TCCTCACTGGGGGAGCTAAGCAGTTTGACAAAGATGGGCACAGCACCAGACTCAACTACCACTT TGGTGTTATCTGATGTGCCTGATGCAATGTTAGGATAATCCTCACGTTGGAGGAAGGCAATAAA GCGAGGCACCACCCCTGTGTTGATCACCTCCTCAATTGGAGGACTCCGCT Transcript length: 653 Transcript exons: 3253934-3254012,3254112-3254275,3254364-3254549,3254654- 3254785,3254880-3254971 CTGAGTCTGCATGTCATCCCCAGTGACGATGTTACCCACCGTGCGCAAAGCTGGAATGAGCACT GAAGCCGAAGGATGCATGAGAAGTTCCACAAGCCTTGGGAACACTCCTGATTCTATCACAGCTT GGATCTTATCATTAGTTCCATCAGACAAATAAGAAAGAGCCCAGCAGGCATCAGTCAGGACCTC CTCGTCCTGAGAATGGATGAGGCGCTGCAGTGCAGAAAGCGCTGGTTTGACCTGCTCAAAATTA GGCTGAGGCTTCCCACGGCAGAAGTTTGACAGTGTCCATGTGGCATTCCTGAGCATTGAGAGCT TGGCGTGCTCATTAAGCTGTTGCAACAATGGGTATAACCCACCACTTGCAAGCACCAGGTCACG GCATTTTGGTGAGTCACCAGCCACATTTCCCAGAGCCCATACAGCCTGCTCACGGACATCCTCA CTGGGGGAGCTAAGCAGTTTGACAAAGATGGGCACAGCACCAGACTCAACTACCACTTTGGTGT TATCTGATGTGCCTGATGCAATGTTAGTGAGTGCCCATGCAGCCTCAAACTGGAGTTGGGGATA ATCCTCACGTTGGAGGAAGGCAATAAAGCGAGGCACCACCCCTGTGTTGATCACCTCCTCAATT GGAGGACTCCGCT
Genomic sequence	CTGAGTCTGCATGTCATCCCCAGTGACGATGTTACCCACCGTGCGCAAAGCTGGAATGAGCACT GAAGCCGAAGGATGCCTGAATTAAGCAACAGCAGTTCAGACTTCAACAATTTGTTATGAAATTC AGACTTCAGCATAGCGCAAGGGTTACATGAAGAGAAAAGGAGGCACTTACATGAGAAGTTCCAC AAGCCTTGGGAACACTCCTGATTCTATCACAGCTTGGATCTTATCATTAGTTCCATCAGACAAA TAAGAAAGAGCCCAGCAGGCATCAGTCAGGACCTCCTCGTCCTGAGAATGGATGAGGCGCTGCA GTGCAGAAAGCGCTGGTTTGACCTGCTCGAACACAAAAAATCAACAAAACCATCCTAATGATAA AAACTTAGGTCAGTGCATCAAAGTAGAAGGTAGCCCAGAATTAAACCTGCTCAAAATTAGGCTG AGGCTTCCCACGGCAGAAGTTTGACAGTGTCCATGTGGCATTCCTGAGCATTGAGAGCTTGGCG TGCTCATTAAGCTGTTGCAACAATGGGTATAACCCACCACTTGCAAGCACCAGGTCACGGCATT TTGGTGAGTCACCAGCCACATTTCCCAGAGCCCATACAGCCTGCGAAGATTTAAAAAAAAAGAG AGAGAAATGTAACAATCTAAACATCATGCAGTACAGGTCCCTCAGGGAAATTATAATTCTTCTG TTAACTGTTGACATACCTGCTCACGGACATCCTCACTGGGGGAGCTAAGCAGTTTGACAAAGAT GGGCACAGCACCAGACTCAACTACCACTTTGGTGTTATCTGATGTGCCTGATGCAATGTTAGTG AGTGCCCATGCAGCCTCAAACTGCGCAAGAAAACCCATGGGGGATGGTTAGCTTTAGCAAATGG TTCCTAGTTAACACTATTAGTAAATTAAATCACTGTGACTGTTGACACACCTGGAGTTGGGGAT AATCCTCACGTTGGAGGAAGGCAATAAAGCGAGGCACCACCCCTGTGTTGATCACCTCCTCAAT TGGAGGACTCCGCT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.344954536

Conservation Information
Conserved circRNAs	NA
PMCS	0.344954536

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							3254434-3254947(-)
						
						Potential amino acid sequence
						
							MLRNATWTLSNFCRGKPQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAV
IESGVFPRLVELLMHPSASVLIPALRTVGNIVTGDDMQTQSGVLQLRR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	3254434-3254947(-)
Potential amino acid sequence	MLRNATWTLSNFCRGKPQPNFEQVKPALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAV IESGVFPRLVELLMHPSASVLIPALRTVGNIVTGDDMQTQSGVLQLRR*(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os05g0155601_circ_g.5

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