Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d017456_circ_g.4 |
ID in PlantcircBase | zma_circ_005078 |
Alias | seedlingc_test_circ_001957 |
Organism | Zea mays |
Position | chr5: 196432552-196439194 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d017456 |
Parent gene annotation |
ypt homolog4 |
Parent gene strand | + |
Alternative splicing | Zm00001d017456_circ_g.1 Zm00001d017456_circ_g.2 Zm00001d017456_circ_g.3 Zm00001d017456_circ_g.5 |
Support reads | NA |
Tissues | seedling |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | Zm00001d017456_T013:7 Zm00001d017456_T003:6 Zm00001d017456_T014:7 Zm00001d017456_T002:1 Zm00001d017456_T001:1 Zm00001d017456_T011:6 Zm00001d017456_T009:8 Zm00001d017456_T010:8 Zm00001d017456_T015:7 Zm00001d017456_T008:1 Zm00001d017456_T004:1 Zm00001d017456_T005:1 Zm00001d017456_T012:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.230875719 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Tang et al., 2018 |