Detail information of Zm00001d017456_circ_g.4


General Information
CircRNA Name Zm00001d017456_circ_g.4
ID in PlantcircBase zma_circ_005078
Alias seedlingc_test_circ_001957
Organism Zea mays
Position chr5: 196432552-196439194  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method find_circ
Parent gene Zm00001d017456
Parent gene annotation ypt homolog4
Parent gene strand +
Alternative splicing Zm00001d017456_circ_g.1 Zm00001d017456_circ_g.2 Zm00001d017456_circ_g.3 Zm00001d017456_circ_g.5
Support reads NA
Tissues seedling
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d017456_T013:7
Zm00001d017456_T003:6
Zm00001d017456_T014:7
Zm00001d017456_T002:1
Zm00001d017456_T001:1
Zm00001d017456_T011:6
Zm00001d017456_T009:8
Zm00001d017456_T010:8
Zm00001d017456_T015:7
Zm00001d017456_T008:1
Zm00001d017456_T004:1
Zm00001d017456_T005:1
Zm00001d017456_T012:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCTGATGAGATGGGCATCCCGTTCATGGAGACGAGTGCCAAAAACGCCACCAACGTGGAGCA
GGCCTTCATGGCTATGGCTGCATCCATCAAGGACAGggatggccagccaaccagctgcggctaa
cgcaaggccagcgaccgtgcagatccgcggtcaacccgtcaaccagaagacgtcttgctgctca
tcctaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.230875719
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018