Detail information of BGIOSGA015781_circ_ig.1


General Information
CircRNA Name BGIOSGA015781_circ_ig.1
ID in PlantcircBase osi_circ_014204
Alias Chr04:1072890_1090445(MH63RS2), Chr04:1072890_1090445(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 1016629-1021529  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015781_circ_ig.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-NN
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCCTGGATCTCTTGCTAGCTAGCTGGATCTTCAATTGTTGAATTACAGTCTAGGCGAGCAGCTC
CATCATATCTTGATCAGTCGATGTTCTTTGAATCGCtatgtagtgtatggacgtatatatcgat
cacctgaatttaagaagaaaagaaagcacgccaagtcagacaaaattaaaaaaaaagggaaaag
ctcgatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TATGTAGTGTATGGACGTATATATCGATCACCTGAATTTAAGAAGAAAAGAAAGCACGCCAAGT
CAGACAAAATTAAAAAAAAAGGGAAAAGCTCGATCATATATATATATATATATATATATATATA
TATGATGGAGTAACTAAAGTACTGAGCTATATAAGTTTCTACGTATGTATGTATGTGCGCGCAA
GGAATGATACCCAAGTAACAATCATGTATGCACACAGACATATGTACATACCTGAGCATGGAAC
CTCTGGGCAGTTTCTTCTTGTAGTAGAGTGAGTGGGTGGGCACATAGAGGGAAGGATGGTGTCC
GTTCTCCAACCCATCCCACTGCAGGCCATCCCACCATTCCTTCTCGCAATCCACTTTGGGCTTG
CGGGTACTGTAAAGACCAACAGCCGGTAGGCGGGTGAGGCTCCAGCAGCCTCGGATTTTGATGG
TCTCGAGCTTGGGCGCCACAATCCTATGCCCGCAGATGCGTTGTAGAGAGGGCAGCTCGTGCAG
GTGGATGTGCTTCAGCTTTGAGAATTCTATAGTTGCCACCAGAAGCTCTTGATTATTATCATCC
ACTCGAAAGACATCCTTGAGGTCACCACAACACACGATCTCAAGGGTTTCCAACACACAGTATG
CATAGGAAAGACTCTTGTAATTTAAGGGAAGCACATATATCAACCTGGGGCAGCAATCAAGGTG
TAGCACTTGCAGGTTGAATGACCCATCATGAGGCTCAAAATGGAGCTGGCCCCTTGTGCCCCAG
TCCCAGATGTGGCGCGCCCTTGCTAGTTGGGATGCCCAGAATGTCTTCAGTAACCAGAAAATAC
TGCCTCTACGGGTACTAGGTGGAGTGAAAACAACACCTTCAATGTTAGGGCATCTCTCCACTCT
GCACCACTCTAGGTTATTCCATGTCCGTGCCTCATTTGAATGGCTTGTGATACTTGCGATAGAC
AAGCTGTCATGCACGTGCAGGCCTGAAGCTCTTTTACAGATGGAACCTGGCAAAGATGGCGACG
ACAATGGTTTCGTCTGCATCCTCTTATCATCTTGTAAGCTAATGTAGTGAGAGGTGCTGCCCTC
CTGTTTATAAGGCCACATCCAGTTGCCGTTCATGGTTGCTTGTAGTTGCAAGTGCTGGATCGTG
GAGTCGACATCCGCATATAACTTCTTGTTGTCAGCAGTTGGTCGTCGGCTTTTGGTCGACATCA
ACCAACGTTGTTCAGCCCTGCTAACGGCAATGGGCCTTCTCTTGCTTATTGTTCCGCCTAATTC
AGAACCATCAGTAGTAGCAGTAGCAACACTAGCAGGAGGGGATGAGATCTCGATGCATGGTGCA
TCCAAGGGATATTTTGTATCATTTAGCGAGCGAAGGAGCCTTCCGTCCCTCACTGAAATATACC
ATTTAAATTCAACAGGTGAGAATGATGATGATTCAACTACACCTGTAGCATGATCAAGTTCTGT
GCTACTAGTGTCGATTTGCAGAACCTCCAATGATACATCTTGTGTTGGCCATAGTATTGCACGA
AGCTCCTTGCATCCAAGCAGAAATAGCTCCTTGAGAGACCCGTTGCCTCGCATTGCACGTAGGT
CGAGGGTTTTAATACAAGTGCCTGAGACGTCGAGTTGCTTGAGCCTCTTAAACACTCCTCTCAA
AAGCACACTCTTCAACTGGGTGCATCCTCGGAAGGAGATGCTCTCTATCTTGGCTGTGACATCA
ACATCATTGTCATTGCTACTGCTAGAGAAGCTAAATGACTCGAGTGATGGCGGTAGGTCATGAG
GGTCAATTCGCTTCAACTCAAAACAACCATCAAAAATGATCGTCTTTACGATTTTGCAGCTAGA
TAGGTTCGGGAATAATGTTGCTGCTACTTGATCTTGCTGCGATACTTGTGACTGATGTTGAACT
TCAGTTATTGGTTCGGTCGCAACTTGGAGCTTGATAAGGTTGAGTAGCCCAAGGGGCTTGGTGC
TGCTTCCGACACCAGTACTAGAATTGTTGTCATCACGGAGTAGATGGCTTATGCTCCAATGCTT
GACCCCCTTCACATTTAGCTCCCTAAGCTCAACCATTAGATCTTGTGCCTCTACTGATAGCAGC
CAATACCAGTCTGTGTAACTCAGGTCAAGCACCCATAGCTTCTGGAAACATGCTCCACTGCTAA
TACTAGTCTCCTTTTCAGTGTCTCCAGCACTAGTACTATTTGGTGTTGAGCCTGAGCAGAGCTT
GTCTTTGTCTTTGCAACGGTCAAGTAGGAGGAATCTTAGGCTGCTACAACCGAGGAAGGGCGGA
GATGTAAAACTAAATGTACACTGGGAGAGATTTATCACACGCAGCCTGTCTACAGATGAATGTT
GGGACATTCCATCCTCTAGTGATTCTTTACATCTTCCGGTTGCTTCCATCCAGAAGAATGATGC
CTTTACAGAATCACATGGCACTTGTAGATAGGCTAGTTTTCTTTCATTATTATTCTGATTGTCA
TTCCAATCCAATCTCAGGTTGGTATGCAAAGCTTGGGCAATCTCCCATGCTGACGTATTACCAG
CGGATCGTATGATCCCGCTGCATACCCAGTAGTTAGCCGCGTGGGTGGCCCAGTCAATACCATG
GTTTCCATATAACAGTCTCACCACCTTGTAGTACATGATGCACTCCTTGACAATCTCAGGGCTC
ATGCCAGGTTTTGGGACACCAGTGGACCTAGCAACCTCCTCAGCCTCTTCATGCAGCAGGGATT
GAACATTAATAGGAAAAGCAAACATAGCGACATCGCTCAATCCGGCAATCTTCTGCAAATCGGG
CAAGATCCAGGGCCCAAACCTGACCTGGGATGTCCACAGTACCCTTTTGCTCGAGAGTCCCATT
ATTGCAGGAACACCGCACTCCTGCACCTCTATGTAGCCGCCGCTCCCGTTGTGGAAGATCACTA
GGCATGTGTGACCGGCAAGCTCATTAAAAATCGCCCGAGTGACATCTGGTATCACCCCTCTGGC
ACCGTGCTCCACGCCATCGAAATCATCCTCCTCGTCACGCTGATCAAACACGGCCATCACCCAC
CGAGGAAGCTTCAGCTCCTGGGCGATGGCCTTCTGCAGGGCCCTCTTGCTCTGCCACAGAGAGC
AATCAACGTGGATCATCTTGTCCAACCCCAGCTTCAGCTTCTCCGGTACAGACGACCATCTCAG
TCGTTTGGCCACCTCTTTGAGGACGGCGGATGACCCCAATCCATAGTCTTCGGTCACGAAATAG
ATCACCGTACTTCTGTTGTTGCTCTTATCGTCCAGGAAATCGATTATCTTCTTTGCTGCTTCAT
CGATGCTGCCTGCTACGATCTCCGTCCACTGCAATTAATAAGTACTAATTAATAATATAATTAA
TCAGACAAACCTAGCTAAGCTTCGCCCTCTACTGTATATATGCTTGCTGTTTTTTGGTACGTAG
AGATACACCAATTATATATCGTTTTCTCTGAGCGTTGAGCTAGCTAGTTAAATTCGGTACTACA
TATACAGGGAGTGTCTTTACAACTTTTGACAGTTTTTGGGTGGAAAACTTTCAAATTAATGATA
CGTACTATAGTATAGTTAATTAGCTAGTGTTAAGGTTTAATCTCGTTGTTGTTTAAGTGATCTT
TTGGTTTGAGTTATATATACTAAGTCTCGTGTGCGTGTGTGCTAGGAGCACGACAGTGCGTGCA
TGTGTGAGTTAATTAGTGTGATATCAGTGAAAGCCATGAGTTGTATGTAAGTGCCTGCATGCAG
TAGATGTGTCAAGTGAAGTGAGTCTCGTGGCGTGAAGTGTGTCAGTAGATGTTATATTTAAAGA
ACATTTGATGATAAATCAAGTCACAATAAAATAAATGATAATTACATAATTTTTTTAATAAGAC
AAATGGTCAAACGATGGATAAAAAAGTCAACGGCGTCATAAATTAAAATACGGAGGTAGTAATT
AGCAAGTGTGCATGTGTGTCCATGCAGCTGAAAGTTTAGTTTGGGTCGTGGAGTTAGATATGGG
CAAGTTTGTTTTATATGGCCTGCGTGGGGGTGTGTGGCTATATAAGCTAGAAAATATATTTTGA
GTTAGTTAATGGGTGTAGAAAATAAAATGGGACTGTCTAAAAAGGTTTCATTGGTGCTATTGCG
CAACGCTGTGGAAAATTTCTGTGTTTGTGTGCCTCTCATTTGCAAGTTAAACACCGTGTGGGTG
TGTCAGTTGTGTAGAGTGTGAGCTGGGCCAACTATTAGAATGTAGTTACAATATATTATAACTT
ATGTACTATAAGTCATATATATGTAATCGAAAATACAAAAAGATTTTGCCGGACTTCTATTCGA
AAACCAGTGAAGTTATAGAGAAGACCACCAAACTGAATAAATTAATGACACTCCTGGGTCTAAA
TTAAAATATACCCCATATATATGTAATGAATTAATGAAAGTGTGTTTAAACAAATTAATAGCAT
CCAAATTGGATGCATACATGCCTGCCTAGCTAATATATACTTTTCTCCGTTTCATATTATAAGA
CTTTCTAACATTGCCAATATTCATATATATGCTAATAAATCTAGACATATATATGTGTTTAGAT
TCATTAGCATTTATATATATGAATGTGAGCAATGCTAGAAAGTCTTATAATATGAAACAGAGGG
AATGCCAAATTTTGCATGCATGGTCGCTGAATAATTTCCATTCAAAATGAAAAGAGAAAACAAT
ATAATGCCACATTGGCACGGAGTGAAATATATACCTTATCCTCTGGCATGATGAGTCGATCTGT
TGCCTGGATCTCTTGCTAGCTAGCTGGATCTTCAATTGTTGAATTACAGTCTAGGCGAGCAGCT
CCATCATATCTTGATCAGTCGATGTTCTTTGAATCGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021