Detail information of BGIOSGA016230_circ_g.1


General Information
CircRNA Name BGIOSGA016230_circ_g.1
ID in PlantcircBase osi_circ_014278
Alias Chr04:18017792_18020980(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 15987715-15990908  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA016230
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA016230_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   Yes-No
Splicing signals   TA-AG
Number of exons covered BGIOSGA016230-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTTGTCAAAGATTCCACCAGTGACAAGGCAGATGAAAACAACAAAAAATCACCTTCAGCATC
CAAAAAAAGGAGGAACCAGAAAAAAGGTCCCTCAGGgttcgagcacatgaatggctttttgctt
cagaagaaggacagtggcatgttgttgaaagtgcaaaggctgctcgtctaattatggtacagct
gtgatgga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTCGAGCACATGAATGGCTTTTTGCTTCAGAAGAAGGACAGTGGCATGTTGTTGAAAGTGCAA
AGGCTGCTCGTCTAATTATGGTACAGCTGTGATGGATGCAAGCATAGTGTGATTATAATTTGAT
ATTTGGGATCACTTTACAGCATTTTCATTGCTTATATTTGTGCCATGAACTTACCTTTACCTTA
GGTATTCTTGGATAGCAGACATGCAAATGCTGACATGGATGTTATCAAGGTGATTATTTGCAAA
TTAGGATGTTGTGCGAATGCCACAGGCTAATACACACTATCCTAATGTTATTGTTTTGCTTCTT
TTTTTTTTTCAGAATGATTTATCTCCCCTTGTTAAGGATCTGGAACCTGGAAATCCTGAAGAGG
AAGCTCGTATACCGTAGGTGTCAATGCATTCTATTTGAAATTTTGTCAGCATTTTTTTCCTAGA
AATTCGTGTTTCCATGTTAAGGAAATAAAAATGTCAATTTCTTTGGAAGTACAACTGTAGGAAA
AGGATCCTAATGAAAATGAAAAATTATTAAGACAAACTTTACAGTTTGGTAGTTAGTAAAAGAG
GGGTTTATCAGTGCCCACGATTATAGTAAGGCTTTGCAATTGGTCCAGCATGAAAACTCAATCT
AGTTCTAATAGAAATTCGCTGATGCCAAATTAGTCTGGTGCACCTATCCTGTATGTAGTCCTAT
TTGAGACAGCATGATCATCACCATTATTATATCTCCTGGTGCTGTTTGTTTATTTCAATGCACA
TTCCCTGGTTATTATATACATTACATCCCCTTATTTGTTATGATATGTTTACCCTAGATCCATA
GGTTAATTTGATGTAATAGCGTCACAAAATAATATCATGTTATTGCTTTTTTAGGACTGTAACC
AAATCCATCTTTGTTTTGGGCATGGGTGTATCTTTTCCTATATTACACGTGTCATCTAGGCTGG
GCAACGAGTTGTTAATGGCCTTGGTTCCAAATTGGAACGAGTTGATTTCATATATAAGTATAAA
ACAATATTGTTATTGCGTACTTGGACTTAGTAATAGTGGCAGAGGTACGTGGTGGAATGCTATC
AGCTATAAGCTTGTTAGGTTGATTTACTAATCAATTACAGTAACACGACAGAACACGGAATTGA
TTATTGTAGGTACATCATGGAATACTATTGCCTTGTACATAAGTAAATATAATTTTACAGGACA
AGTGTTAATCATACCTCAGTAATGCAAATAATGTTACCTTGTGCTGAGAAATGACCTGAAATGC
ATGTTTTATTCTTCATTGAATGAAGTTGCAAATGCATGCAACTATATATGGTCAGATCGGGAAG
GAGCTAACCAGTTGTTGCATTTGTAATAGTACACACAAGCAAAATCATATGTCAATGGTGCACT
GCATCCCACTTGGAATCCCAGTTTTTTTTTTTTTTTTTTTTTTGTTGGGGGGGGGGGGGTGCAT
TATGAGCTTCTTGAATTTTCTCAATCAACTTTCCTACCATGAAATGCAAAACCAAAAAATGTTT
CTTAATCGTGGTTGTGGTGTAAAAACAACTATGCAGGTTCATGATGGCTGGTGATGGTGTGAAG
CAACGAGAGATTCTGCAAGAGGTAATTATTAAAATATATTTTCCGTGGAATGCCTGTTCTAGTG
GCAATTTTGTTTGCCCTTGCCCTAAGGACTAATGTTATCCAGATTGACCATCATCTATATAATA
TTGGAGTCTTTTGCAGACTTGGTGCCATTCTTTTGCATAAGCATAATTACAGGCTTACTGCCAA
ATTATAGTGGTTGAAACCTCTTCAAGTCATTTAGCGCGTATTTTGTCCATGATCTATCATGAAC
GATAGATGCAATGGAACTGTGTCCACTTGATAAAATTTTTCCAAGTATAGGAGTCCCTCTGATA
ACTCACTTCAGCAAAACCGTTTGATGCTGGGCAGAAGAACAGTGAATTTGATGTTTGGACATCA
TTAGTTGATGGACTAAGTTTAGGTTTTTGTTTAAAGATGATAATTAGGTAGCCTAGTCTTCCAT
AATCTGGCTCCTACAAAGGACCTATCTTATGCTCTTAATCTACTGATTTTCATCTATCATTATT
TACCAGTATGTTATCTCTATCAGTTTTGAATGATCCCAAGAATGAGAAACTATATATTATTCAT
TTGGGTATCCTAATGGGTGGTATCTGTTCATAGAAAGACAAGGTTTAGACTGAAAATAACACAA
TTTCTTTTTTCAAAGGAAAGAAGGATTGAAAATAATTTCTATACATCAACTTTGTACTGCATGC
ATACTAAGTTCTAAGAGTCAGTCCATTCTATGCCATCAACAAAGCGCTGGTTATGCCATTGGCA
AAACTCAGTTCCACAATATACCATCGAACAACTCATTTTCTTCCTTATATGTCATCGCCGTTAG
TCAAATGCTGTTAAGAGAGGAAAAGTGAACATTTTACCCCTAGGATAAATTTGAGATTTTGCAC
AATGCCATGTAGCATTAAATAATCTTGGATGATAAAAAGAAAAGCGGTTTCTATTTTTTCATCA
ATGAGAGGAAATAGTGGATCATGACCAATGAAATCCATGAGGACGCATGATACCCTAGAGGCAA
AATGAACATTTTCTTGCCCTTAATGGAATTTGACTAACTATTAACTAGCAACGATAGAATGTAA
GGAAGAAACTAGTTGTTTGATGGTATATTATAGAACCGAGCTTTGTCAGTGCTATATTGTAGAA
CCCATGGTTAATAGCATAGAATGGATTATCTCAAGTTCTAATTAGATAGTATAGATGCACTTGT
GGACTGATATGTTTCTTTATTTTAAATTTTCGAACCACCTGATTCACTTGCTAGTTGCAATTGC
AATTTCTTATCACTGTTGACTTGTATGCATGCCCTACCTTCTCTAATGGACTGTTTGCGTTGAA
TTTTGAAGGTAACTTCAGAAATAACTGGTCCTATGGTTGTGGAAGATGTTGTTTATGAAAATAG
TGATGAAGACCAAAGTTCTATGACTGAAAAGATGTTCCGGCGCCTTATATTTAAAAGAAATTCT
GGCTTAGTGCAATCTGAAGCATTGCTTGTCAAAGATTCCACCAGTGACAAGGCAGATGAAAACA
ACAAAAAATCACCTTCAGCATCCAAAAAAAGGAGGAACCAGAAAAAAGGTCCCTCAGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021