Detail information of Os01g0758400_circ_g.1


General Information
CircRNA Name Os01g0758400_circ_g.1
ID in PlantcircBase osa_circ_003965
Alias NA
Organism Oryza sativa
Position chr1: 31872442-31876652  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0758400
Parent gene annotation Similar to Phosphatidate cytidylyltransferase. (Os01t0758400-01)
;Similar to Phosphatidate cytidylyltransferase. (Os01t0758400-02
)
Parent gene strand -
Alternative splicing Os01g0758400_circ_g.2 Os01g0758400_circ_g.3 Os01g0758400_circ_g.4
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0758450-00:7
Os01t0758400-02:8
Os01t0758400-01:8
Os01t0758450-00:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAGCCTACCTCAGTAGGACGTCTTCGCTGCCTGGCACGTCCTACATGAGAAGCAGAAACATCAC
TAGAGCTTGTGTCCCTTTCCATCGCTGCTATTTGATctttattttaaaggccctcttgaagcca
cttgcaaagaaacctccaaaaggtgctattattgatgcaaacaaacctagtgctaaagcatgcc
actgcaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTATTTTAAAGGCCCTCTTGAAGCCACTTGCAAAGAAACCTCCAAAAGGTGCTATTATTGAT
GCAAACAAACCTAGTGCTAAAGCATGCCACTGCACAGGCAAAAGAACAACTTCCTTCCAAGGGA
ACTGTCAACAATACATGTAATAACTTATTAACTTTAGCCAAAAACATCCATTGCTTGGAAAACA
TGATAAAAAACAAAATTCAAACGAAAAACAAAAACAGATTAATATATACAGTAGGGGGCTCCCC
TACTGTTTTCCAGTGGAAAAAAGAACAACTAAAACAGATGACTCATCATGGTCAGGTATCATTA
ATTCATAAAACAAGGAAATTGAATGGAGTTTCAAAGAAAGTAAATGTGTTGCTTAAGTAGAGTT
CATGCAAAGGACATGATTATGGTTGTCTCGCCTTTTTCAAGGACTAAAAAGGGGATAAACTGCA
TTACTCATTCAAGCATTCATGTGATCACCTGGCATCTTTTTGGTCTTTTATAGACTTTCTACTT
GTTCTACATCATTCTTCTTGTATAACGAGAAAGCGGTAATTATTCTGCTGAATGATATGACGAA
TTTACAGTGTGATAACTAGTGCACAAAATAGTATTAGATAGAAAGCCCATTACTTTTTTGAAAG
AAAAAAGAATATCCCAATAATTCTTATTCCTAAAACTTAGAATACAAAGGCTGGTGCTTTTTCA
AGTATAACAGGACGCAGCATCTTGACTTGGAACAAGGAACTTTGCTCCTCTTGTGATTTCAACG
GAATTATAAACAAATCAACTAACTCAATTCCATGTTCCCAAGTTTTCCAGTCTATAACCCAAAA
AAAAAATCAGTATGATAATGGGTATGAGAACTGAAAACTTTCCTTGGCCACATTGATAATATTC
ATGGTTAGGCTTTACCTTAGGAACTTAACCTAGAGGGGTAACGTAAACAACCTATAACAGCGAA
AGTAAAATAAATAAATTGAACAGAATAATGTTCAATGTTCTTACCCCCTTTGGCACCCATTCTC
CCAAAGAATAATGTTCTGGCTTAAACATAGGACCAGGGTCACAACGAAGCCACCCTGTCGACAG
GTCCTGAAATCATTTGCGTGATAAATATAAGAAAAGAATCACAGTAGCAAATTGTGTAGACAAC
TCACAATCACATTCCAAAGGAAATGATATCTCACTTTTCTTGGGCATGTCAACCATTGGAAACG
GCCCATTACATTTGCTAACTGCCAAAAAAAAAGGGAGTGAAAAACAGTGTCAAATATAACTAGA
AATATAATGTCCAGATATCATCTTTTGCATGAAAAACTGAAATGAATTATTATTTAAAGCTACC
CCTTGAAGTGGCATAGTAGTCTTGCGTGAAAATAAACCATGCTAACTGACATAGACTAGCATAG
TTAGAGAACTACAAAAACAATTAACAGAAGCTTTCATCTCACCACAAAAGCAGATATGATAGTT
GTCACAGATGCACCAATAAAACCTTCCCAAGTTTTCTTTGGAGATAACTTGATCAGAGGTGTTC
TCCCAAGAAAGAACCCAAATAGATAGGCAGCAATGTCGTTAATCACAATGAGAGAAGCAGGCAA
CAGAAACCTGTGTAAGTAGCATTACAAAGGAATTATATGGAGTTTGTCAAATGGTGTCTATAAT
GTAATCTGTTTCTAGATAAATAGCATGCACATAATATGACAAGTTCTCTACAATCTACAGTACA
TCATTTACTGATGTGTGGATGACATTCGATAGTTCGACCCAAAAAAAGAACTCTACCTGCTCAT
AATTGGTACGGTGCAAAAAGGAAATAGCAAGGCACAAACATACTGTGTATGACTGTTTCATTTT
TGCAAATGGTGCTCCTAAGATTTTCTGCTTTTTCCCTGATGGAGTACTGAGCATCCCAAAATTG
GTAGGTCCATGGTGCAAACAGATATATAAATAGGTCAAATATGGCTGGCCCAGTGACTATATCA
TTGTTACAGTTAATATTCCTTTTAAGTTGAAGAGGATCAGGGTAAATTGTTTTTTGCAGCTGCC
AGACAAGTTGGGCAGCATGATGTTACTACTGTAGAATTCTGCAAAGTTAAGCATAGAGCACAGA
AGATTTAGAGTCTCAGAAAATTTTTGTGGTGTTTTTTGTTTAACTTCTATACATGAGGAAACTT
CTGAATGATTAATTACCTAATAAAAAACATGTTAGAGTCACTATTAAATTAAAATTGCTACAAG
AAATCATGCATCTAATTTTTTTTTAACACGGAGGTGTTAGCAAGGAAATATATGGCTTACCAGA
ACATCCCTTCAAATATATTTGCCACGGTAAAAGAAGATTGTGCAAAAACCGTTAAAAGGATCAT
GTGCGTCCAGGCATATTGTTTGAACTGATACTTGTATGTCTTTTTCTTCAGAGTCAAAATAAAC
CAGACAAATCCTGGATCATGGCAGTTTACATTATACTTTTTGCCAGACAAGAACTAGATATCGC
CAAGATGACAGATTACCAAAGTAGGACTGTATATAGCATAACTAATCCAATCGAGTGAATGGAA
AAAATTGTCAAAGAAACAAGCATGTGCACATTAGATCCTTTTTGAACACTTAGGCAGGTCTGCA
ATGTTATACAAGCACTGAGCTCTGAACATTTGAAAAGGGCTCATGGGATGATGCCAAGTCCAAA
ACAATTGAAATGAAGTGGATTCTCTGCCAACCGGTTCAAATCAATAAAACAAAGAGGAACCAAG
AAGTTCGCATGAATACTTGTTTTAATGCCAGAGCTAAAACTATACTCAAGACAACTAAAAAGAT
GAAAACTAAATAATGAATGCAGAAACTGTTCTCTAGATAATATTCAGTTGGTGTTTTAATGCCA
GTGCTATAGATGAAATGATACCACTCAAGACAACTGAAATCATGAAAAACTAAATAATGACTGC
GGAAGTTGGCTGTGGGATTCTTTAGCAGCGCAGGGGGCCATAGATGATATGGGTACAATGTAGT
TAGTTTGGACAAGCTCTTTAAAGCTATGATCATGTAAGAAACACATAACTATTCTTGAGTCTTT
TTAAACACAATGAAATTCTTAATGAATAGTTATTGTTTCAAATTAATTGCACACTGTACTTACC
AGCAATGTAAAGAAAATAGCAAATGAACATCTGATACTTTATGAGACCACTGACAACCTTATAC
AATAAGTGATCTGAAGTTACTGTGTTAACAAGCTGTCGACTAAGAAAACGCCCATAAGTAAACA
ACATTGCTGTGAAAAAGAAGTGCCTGCAAAAAAAAAACCCTTACATAAAGAACTTGAACAGAAT
AGGCATACTTTTGAAAAGCATTGCATTGATGGCATCTACGAGATTAAAAAAAATTCCAGCTCAA
ATCATAGTACAATTGAAATGACCTACCAATTCAGTAGCCTGAAACCTGGTAGTTGTTTTTCTTC
ACTGGATTTTCTGAGTAGGTTAAAAAGCTCTTTGGCCATGAATATTTGAATAACAACCACCATG
GCCCAGATATAGAGGTGACCCATATAAACTATCAACACAAAGCCTCCAATCATCCATACTGTAG
AATATGTACGGATAAGCATTGACTTGTACTTATTCTGATCATTGACAAGCAAAGCTGGTCCATT
GGTTCTATTCCCATCTGCAGTAGCCTGAACAAAAAGGTATCAATAAGCTCCAAAAAATGTGTGC
CAGGTGTAACACAAAACAAGTTGTTGCTTTAGCTTTGCATCGTGCTCCTGTTTCAGTGACTCGG
AAAACTCAAAAAATAATAAAAAGGAAGAATGAAGAGATGGAAGAGTAAATAAATGTAGTAACAA
CAGAGCAAACAATTTTTATTCACATCAACAACTCACCCTACAGGTATGGTTATGAGAAGTCCAA
AATAATTGAGAAAGTAAAGTTAAAAGATAGGCATTTTGGTTACACAATAGCACAGCAAGCTCAC
TATACAAACAAAATAAATGAACCACTCTTCCCAACCACAAGGGTCTGCCCAACCACAAAAATAA
ATAAACACGGAGATATGAAGGCAATGCATACTGAGAAACCAAGGGGCCTTTCTGTTTGCTAAAA
TTTGTCATAATGAAATAGCCTACCTCAGTAGGACGTCTTCGCTGCCTGGCACGTCCTACATGAG
AAGCAGAAACATCACTAGAGCTTGTGTCCCTTTCCATCGCTGCTATTTGAT
Conservation Information
Conserved circRNAs NA
PMCS 0.117041754
Functional Information
Coding potential Y
Potential coding position 31876598-31873473(+)
31876640-31876646(-)
Potential amino acid sequence MRSRNITRACVPFHRCYLIFILKALLKPLAKKPPKGAIIDANKPSAKACHCTGKRTTSFQGNPF
GTHSPKE*(+)
MERDTSSSDVSASHVGRARQRRRPTEATADGNRTNGPALLVNDQNKYKSMLIRTYSTVWMIGGF
VLIVYMGHLYIWAMVVVIQIFMAKELFNLLRKSSEEKQLPGFRLLNWHFFFTAMLFTYGRFLSR
QLVNTVTSDHLLYKVVSGLIKYQMFICYFLYIAGFVWFILTLKKKTYKYQFKQYAWTHMILLTV
FAQSSFTVANIFEGMFWFLLPASLIVINDIAAYLFGFFLGRTPLIKLSPKKTWEGFIGASVTTI
ISAFVLANVMGRFQWLTCPRKDLSTGWLRCDPGPMFKPEHYSLGEWVPKGFPWKEVVLLPVQWH
ALALGLFASIIAPFGGFFASGFKRAFKIKIK*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017