Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0758400_circ_g.1 |
ID in PlantcircBase | osa_circ_003965 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 31872442-31876652 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0758400 |
Parent gene annotation |
Similar to Phosphatidate cytidylyltransferase. (Os01t0758400-01) ;Similar to Phosphatidate cytidylyltransferase. (Os01t0758400-02 ) |
Parent gene strand | - |
Alternative splicing | Os01g0758400_circ_g.2 Os01g0758400_circ_g.3 Os01g0758400_circ_g.4 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0758450-00:7 Os01t0758400-02:8 Os01t0758400-01:8 Os01t0758450-00:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.117041754 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
31876598-31873473(+) 31876640-31876646(-) |
Potential amino acid sequence |
MRSRNITRACVPFHRCYLIFILKALLKPLAKKPPKGAIIDANKPSAKACHCTGKRTTSFQGNPF GTHSPKE*(+) MERDTSSSDVSASHVGRARQRRRPTEATADGNRTNGPALLVNDQNKYKSMLIRTYSTVWMIGGF VLIVYMGHLYIWAMVVVIQIFMAKELFNLLRKSSEEKQLPGFRLLNWHFFFTAMLFTYGRFLSR QLVNTVTSDHLLYKVVSGLIKYQMFICYFLYIAGFVWFILTLKKKTYKYQFKQYAWTHMILLTV FAQSSFTVANIFEGMFWFLLPASLIVINDIAAYLFGFFLGRTPLIKLSPKKTWEGFIGASVTTI ISAFVLANVMGRFQWLTCPRKDLSTGWLRCDPGPMFKPEHYSLGEWVPKGFPWKEVVLLPVQWH ALALGLFASIIAPFGGFFASGFKRAFKIKIK*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |