Detail information of BGIOSGA031562_circ_g.1


General Information
CircRNA Name BGIOSGA031562_circ_g.1
ID in PlantcircBase osi_circ_008604
Alias Chr10:22075618_22077202(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 18717266-18718850  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA031562
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-CA
Number of exons covered BGIOSGA031562-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGTCTTTTCAGCGAACTGGTACCAAAAGCAATTTCACCAGCAAGCATCTTCACTTGCTCAAT
CAGTAGATCCATTTGATCCGATGCGGTGATCCCTCCccttctgttgtagctgctcctgaaggac
gcgattatcagctgatcttaactgtagcattaaaaaaaggcacaatcgtgagaaaagttaagac
ttggtatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCTGTTGTAGCTGCTCCTGAAGGACGCGATTATCAGCTGATCTTAACTGTAGCATTAAAAA
AAGGCACAATCGTGAGAAAAGTTAAGACTTGGTATGGGATAAATTTTATTTTAGACAGCATACT
GAAACATTTATTTTTAAAATATCACCTCTAATTCAAAAGCCTTCTCACTGCACTGAGCTGTCAG
CTTGGTAATCGTCTGTTTTCACAAAAGTCAAAAAATGTTACTAAGAAAATCACATGAACATCAA
GAACGCCAGGGGCTCTGGAGCCTGGACAGAGAAAAATTGCATGAAAATTAAGAAACTTGGTACT
ATGAAGTCCGGATGCATCACCTGTTGCATATCCATCATGGAAGCATTAGCAACTGATGCCTCAC
CGCTTTCCATAAGTTTTTGCTCCAGGGCTCGCATATGCCTTCTCTTCTCCCGGATTTCACGCTC
TAAATTATCTATCTGTGATATAAAAAAATATATGTGCATCTGAGCATTAAGACAAAGAATAGGA
CACTGGAGCATCAAAATTAATGAGGATTTGAAGATAGTGATGACATAGAGAGTTAGAGACATAA
ATATAGCAAAATGGAGTGCTAAGGTGTGCCATGAAGCATGGAAATATATTCGTAATGAAACAAA
ATCAAGAAGTTCAGCACTTTATACTGCAGTCAACAATTCCATACGTCTATCCTTCATAAATACA
AAATAAGAAACTAGTATATGTTCATTTATCCTTGAGAAGATAACTTTTAAACTTCAGGTAACAA
TTCTTATCAGTCATAGATCTGTTCTTACATAAGAAGTACTCCGTAAGATACAATAAATAACAAA
AAAAAACTATGAGTGCCCAGCCATGTATAATATTATTTTACCTGCCATAGAAGTCAGCATAACA
GGGGTCAGGGAACTATTCTTTTTCGAAATTTTGTTGAATAGAAATTGGTATGATTTGTTCATAA
GATGTGTCGTTTGTTCTGCTACCGATTTGTGTCTAGAAGTAAATTACATGATTGCTTCTTCTAC
AAATAGAAAAGATCGAAAACTGCCCAAAGGTAGTAACTACATATCTACTATTATAAAAATTGAA
GACGTTTTTGCCGGAACTTTGGTACGTCATCCGTGTTTGAGTCGGTTTTTGAGTTCATTCGTTT
TTGAAATTATATATTTGTATTTGAGTAGGTTTTTAAGTTCGTTCACTTTTGGAAATATAGAAGT
CGTCGTATAAGAAATCTCTTTAGAAAAAACTCGCATACTAACTCAAGACAATCAGACTCCTAAT
TGTAGCTTATGACCTTGTAAAAACAATATCCAAGCAAATTCCTACATTGAATTTCATCTTAGCT
AAATCGTATAACAATAATAAGATTAAGATAGCCTTCAACCGTTGCAACGCACGGGCATTTTTTC
TAGTGAAGTATTAAGAAAAAGGAGGAAAAATATTACTTGATTCTTCGTCCCTTCAGGGTCTTCA
ATAGATTGCTCAATCAGTCTTTTCAGCGAACTGGTACCAAAAGCAATTTCACCAGCAAGCATCT
TCACTTGCTCAATCAGTAGATCCATTTGATCCGATGCGGTGATCCCTCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021