Detail information of BGIOSGA014816_circ_g.5


General Information
CircRNA Name BGIOSGA014816_circ_g.5
ID in PlantcircBase osi_circ_014508
Alias Chr03:27916616_27917216(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23163629-23164229  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRI2
Parent gene BGIOSGA014816
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014816_circ_g.3 BGIOSGA014816_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   TT-AC
Number of exons covered BGIOSGA014816-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTAAAAAAATACCACCAAAAGAAGGTCCAAAGAATGATGAAAAGATGTCAAATGGATCAACATG
GGATCCGCCTCCACCCATTCCTTCCTTGAGGGCATCcttctcgcccttgcagcctgggcagcga
tccttctcattaatgctctctccagtccccttacactcattgcaaggctgctgcatctgctgta
tcatggaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCTCGCCCTTGCAGCCTGGGCAGCGATCCTTCTCATTAATGCTCTCTCCAGTCCCCTTACAC
TCATTGCAAGGCTGCTGCATCTGCTGTATCATGGAAGGCCCCAGCTGGCGGATGGTGATTTTCA
TGCCAGACCCCTGGCAACCTGGGCACCTCATGGAAGCACCAGACTTGGAACCCTTGCTGAAATG
AACAGGGAGTAATGTTCAAGAGCAGGATTGTGAAAATGCATAGTTTAACTATGCTAGGGCAAAC
CAGACTTACCCCTTGCACTTGGCGCAGAGGACATTGCGGGAAAGAGAGAGCTTCTTTGAAGTAC
CATTGTAAAGATCTTCTAGAGAAACCTTAAGCGGATGGATCACATCCTCTCCCCTCCTTTGTCT
TCTGCCCCTGCTGCTGCCACCACCTGTGCTCAAAACATAAACAAACGAAATTTCATTACATCAA
CAAAACAAGAGATTAACAGAGTTCAACACAATCACACAGGAAAATGTATTGTCTTAAAAAAATA
CCACCAAAAGAAGGTCCAAAGAATGATGAAAAGATGTCAAATGGATCAACATGGGATCCGCCTC
CACCCATTCCTTCCTTGAGGGCATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021