Detail information of BGIOSGA002493_circ_g.1


General Information
CircRNA Name BGIOSGA002493_circ_g.1
ID in PlantcircBase osi_circ_009361
Alias Chr01:1198256_1198623(MH63RS2), Chr01:1120119_1120486(ZS97RS2), Chr01:1198256_1198623(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 1463968-1464335  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method CIRI2, CIRCexplorer2, CIRI2, CIRCexplorer2, find_circ, find_circ
Parent gene BGIOSGA002493
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGTTTGATTCATGGTTCCATACCAAGGAGAAAATTAGAATTGTAAGACCTCCTAGAATTATTT
CGCATGGAAAGAAGGCTATTCGTAACCTAATAATACctaaacagtgaattgcaacctcataaaa
acatatttagttttgggagggatactatcaatgctggttcatagcatatgaacatgggtgacat
atcaaatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAAACAGTGAATTGCAACCTCATAAAAACATATTTAGTTTTGGGAGGGATACTATCAATGCTG
GTTCATAGCATATGAACATGGGTGACATATCAAATGGCAAGCAAATTCATTCTTTTCAAATGAA
CACATAGCACATATCAACCGACAAGCAAATTCATCATCGTTGAGTTCTACAAAAATGTTTCTAC
TAAATATGTTTGTAGCTCTTATACTTTTAATTAATGAAACTGTGGGCTTACCTCCTGATTCACG
GTAAAAGAAGTTCTGTTTGATTCATGGTTCCATACCAAGGAGAAAATTAGAATTGTAAGACCTC
CTAGAATTATTTCGCATGGAAAGAAGGCTATTCGTAACCTAATAATAC
Conservation Information
Conserved circRNAs osa_circ_000172 osa_circ_000171
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021