Detail information of CH398237.1_circ_ig.1


General Information
CircRNA Name CH398237.1_circ_ig.1
ID in PlantcircBase osi_circ_019046
Alias Chr03:20557831_20559679(MH63RS2), Chr03:20598059_20599903(ZS97RS2), Chr03:20557831_20559679(MH63RS2)
Organism Oryza sativa ssp. indica
Position chrCH398237.1: 23629-25473  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, find_circ, CIRI2, find_circ, CIRI2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing CH398237.1_circ_ig.2 CH398237.1_circ_ig.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAGCGTATTGATCGGCGTCGTGCCACATCATCACCATCATATAATACCTGCTGCAGAGGAGGA
AGTGTTATATTGCCTCCATACAAGCCACCTCCAGAGggtgatgtgatgtctacatctaatggtg
cactgcttgctaatactcgccggcgacgctggcagcatatctttactgatccaccagcaggttt
taaatgag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGATGTGATGTCTACATCTAATGGTGCACTGCTTGCTAATACTCGCCGGCGACGCTGGCAGC
ATATCTTTACTGATCCACCAGCAGGTTTTAAATGAGTTGCATACCCTTCACTTATTATTATTAT
TATCATGTTCTGCTTATTTATTTCACCGACCTGTGTGACTTATACAAACAATGAAATAATTTCA
TGCTCTCCCAGCTGACACGCTATCTGGTGGTGATGGCATCTTTCCTACGGATTTTCATTTGCCT
TCTAGACGTTCTGTTCGGCGGCGATTGTCTGCTCAGCCCATCGGTATAATGGCCATATTGCACT
TTTTGTGCCATTTATATTGCCATTGTCTACCTGCACTCTATGGCGCATGAACATACATGTTATA
GCCACACATTCAACCAGCTGCGTTGTGGTGTTGGTGAACATTATTGTGCTTCACTACTTTTCTA
CCGGATTTATTGCATTGATCATGACCATATCATTTATGTTCTTAATTAGATTTCCCACGGCCAG
ATTCTGCGACAGCTGCTCAATCACGTACATGCTGGCATCCTCAAGGCATAGTATGTACTACTTA
ATTTCCCGTGTGTTTTTCCTATGGTTTTACTTGGTGCTGCTACCTGTTAGGTGATTTTAATTCT
TACTAATATGGGGGTTGGTATCCGTAGGTTCATCATCAACCTCCCATGCCGTTTTAACTCCATC
AATTAAGCATCGTCGTAAGTAAATTTCTAGGGCCCCTTCTATGCATTTCTTTTTTTACTATAGT
TATATTCTTCGCAGCAAATACACTGCTCCTACTAATGTGAGTTTCTAGCTTTCATGAACAGGCT
ATACATTCCAGCTTAATCAGATTACATCTCATAGCTTGGTTCTTCCTGTGACAACAGAGGCTCA
GTCATGAATGTTCGCCATGCTGATTTGTGCTAAAGCTTGCTGATAAATGCTCATCATAGCATTC
CATTTGGATCAATTTATGACATAATAGCTCACGATTGAAATTTACTATTGTTTTCGACACAATG
CACTTGAAGGGATACTCGATTTTATGAGGCCAATAAGTGTATGTACCGATGCCTGCACGAAGGT
AAGCTTGGGTAATACTTATCTTAGGGTATAATAATTTCATGAGGTTCTGTTTTAGCCTTATATT
CCATGAAACAAATGTTGGGTATTGATTCTTCTTTTTTATATTTCCTTCTTTATAATAATTAGCC
TAACAGTACCTGTGTTGGTCATATTAATTAATATATGGTGTTAACTATATCATATGGATGACAT
ATGCCAATTCATTTTGGATAGCTACTTTTGGTCTGATCTATGATATTGTCATATATGTTCAGTC
ATTGATGTTTGGCATGCTGATTGTTATAGAAGTTTGCTAATCGATGCTCAATTCGCTGATTCAG
TCAAGTTGGTTCGTTGGTGCAATCAAGCTGATTCATTGATGTTGGGTTGATGGTTGCCATCTTC
ATTGGTCATAAAATTCATTGATGACCAGTCATTCTGCTCATTTGCTGAAATTCACTTTTGAATA
TACCTGATGACTGAGTGGCATGATGAACAGTAGCTGCATATACTGTATGGTTCTATGTGCATTT
GCTTAAGCCTTCAAATTACTTCATTGCGATTAGGTTCTTTGGCTTACAAGTATGATTTTTTGTT
GCTAGGTACTATCTTTTCTCCGTTGAATCTTGGCCCTCCAAGCAATACATGCCGCTATTGCGGT
GCTTACTTTTGGTATGAGGAGCGTATTGATCGGCGTCGTGCCACATCATCACCATCATATAATA
CCTGCTGCAGAGGAGGAAGTGTTATATTGCCTCCATACAAGCCACCTCCAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021