Plant Circular RNA Database

Detail information of Os10g0556700_circ_g.5

			
						 General Information
					
						CircRNA Name
						Os10g0556700_circ_g.5
					
						ID in PlantcircBase
						osa_circ_007965
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 21888268-21891173  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os10g0556700						
					
						Parent gene annotation
						
							CCR4-Not1 complex component, mRNA deadenylation (Os10t0556700-01
)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os10g0556700_circ_g.6 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0556700-01:6

General Information
CircRNA Name	Os10g0556700_circ_g.5
ID in PlantcircBase	osa_circ_007965
Alias	NA
Organism	Oryza sativa
Position	chr10: 21888268-21891173 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os10g0556700
Parent gene annotation	CCR4-Not1 complex component, mRNA deadenylation (Os10t0556700-01 )
Parent gene strand	-
Alternative splicing	Os10g0556700_circ_g.6
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0556700-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CCAAATGAACATTGTAATCCCCAAGATTAATCAGTTCAGACCGAATTAGTCCAATAATTATGTC
GATGTTAAACTTCTTATCTTCGTCAGAATATATTACctttaccaccagtgccacaagctttgaa
tatgaatcaattgagaagtatgaaatctggagttgctgcgttggctgctgagaaatcccgccag
gagcaact

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTTACCACCAGTGCCACAAGCTTTGAATATGAATCAATTGAGAAGTATGAAATCTGGAGTTGC
TGCGTTGGCTGCTGAGAAATCCCGCCAGGAGCAACTACTTGCTCAGAGACTACAGAGTGTGCCA
CAGCAAGTTCCTGGCCATTTTGCAAAAATATTAGCACTCGCATATAAATCATTAGCAAAAGAAC
ATGATACGGGTAGAAAAGACACCGTGAGAATATGGTAAAAGCGGTCGGTCAAATCATCTCCCTT
TAGCAAGCCATCCTGTTGCAGCTTCACAATGTAATGAGTGTATGCTGAATCACCCATAGTGGGA
TGATCGCATATATTACACCATTCAGAGAATGATACTGCGACCTGTGCATCATCCAAATAATGCA
TTAGCTTTCCATGAATATAGGTTAATTTCAAAGTCAATAATATGTAACATCAACACATTTAGAG
GTCAATACTTTTAAAGAATCAATTACTAACCATATTCAAAATAATATTCCATCAAACATAATAA
ACATAACTGCAGTCTGCAAAGAATATTAATGTCTAGACCATCTTTTTTTAAGAAGAAAAAAAAA
ACCTACGAGGATCTAGGTGACTTTTTTAATCAAGAATAAATAGGCACCCAATGAGGACTTGAGC
TTTGGTAGCATTCAACAAGTTCCTCCCTTTTCATGCATCCATCTAATCAAACTAATCTACTGAG
GAACAGTGACAACTTATTAAGAGATTAGCAACAAAGGCATCTCTAGTTATTTGTGTGAAACCAT
CATAATATGCACAAGGAGTTTGTCAGCTTTTGTTAGAACATGTACAGAGTGCACACGTTACAAA
GTATTATCTGTATGCAAAATAAAAAAAATGACCAGCTAACAAACAATTCATACCACCAAGTCTG
GTTGAGGGGGGCACAGTTTTTTTTTGTACAGAAGGTGACACAGGAATGTTTCCTTTTCTTAAGC
CATGTGAACAAAAAAAAAATGAATGTTCCTGTGTAGAACTGTTAAATGACTAATGAATGCTCCC
AAGTCTTTTTGAAGGACATTGACAGAGTCTCCAAATCAAATATTTATTCACTGCCTTTTCTAAC
CACAAATTCATAACTACATGAAAGCGTTCTTTCTCATGAAAACTAGTATATCATTTTCAGTTTT
TCGCATCAAAGCGTTCGTTCTATCTCTTTTTTTTTGGCATATGTTAGGGAGTTAACATTTGAAG
ATTTGACGATGACATCTATTTTGAGAATGGAGGAGCTGTTTGGAGTAAACTGCATTAAGATACA
TGTTGCATGACACTGAAGCAGCTAGAGCATACACCACATATGTCATACCTTGGTTGCTGTTCAT
GATGAAGAAAAGATGTAACCGAACAGGAACCAAAGTTAAATCGATAAAGAAAATAAATTTATTG
TTCTATCTCTAATAGTTTCAGGAGATAAAATCCTGTGTGATGTCTCCACAACGAAAACTGATAT
AGTGTGTACAACTAACCTTCTCCTGAAAACCAACAGCATCAGTGAACGCAACATCATTAGCATT
ATTTTCCTCTTTATTCACCAAAGGACGACCGGATAAAACCTGAAACCAGTTAGGTGTAATTTGT
GGAGTCAGCATAACATTTACTATTGGAACAATGGAAGGTATGACCAATTATCGGTCTCCTGACC
TTTTTATCCCTTGACTGTCTAATATTTTCATCCTTCACGGAAGCAAAACTTCTAGCGATTTCAA
TCAACTGCTGCAGCGATTCAGGAGAACTGGGCCTGATTGCAAGCTGCAAAATAGCATATGTGTA
AGCCAAATAAAAGGTCATAAGACACTAGAATAAAACATCTGCAAAAAAAATGTCTTACTTTTGA
TAAGGCATCAACAACATTATAAACCTCTGCGATGCTAATAGATTCTTGGGTAATCAATGTCTGG
ACAAGTGATATAGCAAACTCGGTTGCAGCCTCTGAGGAACAGAAAAAGAGACATGAAAAACTCT
CCAATGAGATGCAGCACATACAACAGATTCAAAATTGACTTTGTTTTATATTCAGTTTTTCCTG
TATTTACTAATTGAAGGGATTCAACATTATGCTGTAACAGAAACAGTTTACAGGAATTGTTCTT
CACAAAGATAAACTCGTCAACAATTCTCCAGACATTTAACATAGGACACAGACAGAAATTTATA
ACATTTGGCCCATTGCATATATTGTGGACAGACATGCACATTAAAAACATTTGCTCCACTGCAC
TTTCTTAAGAAAATTTTAAAACAAGTAACCATCATTCAGGTATTATAGATAGGTTAAAATGGGA
GAAACAAAGGGGGTAGAATATGCCGCATTCCGTTTCCTAGGCTAAAAGCAGATGCGGCATAGGT
CCCATTTTTCCATACTAGACACTAGAAATTATTGGGTCCAATGCCTGAATTACATGATTTACTC
TGCTAATAACCAAATAGTTCGATTAGTGAAACTATGTTAGAAAAGAAAATCAATAACAAGTTGG
CTCAGCAACATTTCAAATTCAATAATCTAAATCAAGTACTTCATCAACCTGAACATTGGATGCA
GTATGCCAAATTATGGATAAGTTTCATCACATCCCTATTTGTTTCATCAATACAGGACATGCAA
GCTGTTTTAACTGACAAACCAATAAACGGAATGCATGAAAACTTTTCACTTGCTACATGCTAGA
ATAACACAGGTATATCTATGCCTGAATGCCAAACATACAACAATACCCAACTTAAACAAGAACT
AGCTTTTCAAGTACTTTCTCAACTTACTGTTTCTTCCGCCATCAATAATCTTCGCCAAATGAAC
ATTGTAATCCCCAAGATTAATCAGTTCAGACCGAATTAGTCCAATAATTATGTCGATGTTAAAC
TTCTTATCTTCGTCAGAATATATTAC
						
					

			
		

Sequences
Splice junction sequence	CCAAATGAACATTGTAATCCCCAAGATTAATCAGTTCAGACCGAATTAGTCCAATAATTATGTC GATGTTAAACTTCTTATCTTCGTCAGAATATATTACctttaccaccagtgccacaagctttgaa tatgaatcaattgagaagtatgaaatctggagttgctgcgttggctgctgagaaatcccgccag gagcaact
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTTACCACCAGTGCCACAAGCTTTGAATATGAATCAATTGAGAAGTATGAAATCTGGAGTTGC TGCGTTGGCTGCTGAGAAATCCCGCCAGGAGCAACTACTTGCTCAGAGACTACAGAGTGTGCCA CAGCAAGTTCCTGGCCATTTTGCAAAAATATTAGCACTCGCATATAAATCATTAGCAAAAGAAC ATGATACGGGTAGAAAAGACACCGTGAGAATATGGTAAAAGCGGTCGGTCAAATCATCTCCCTT TAGCAAGCCATCCTGTTGCAGCTTCACAATGTAATGAGTGTATGCTGAATCACCCATAGTGGGA TGATCGCATATATTACACCATTCAGAGAATGATACTGCGACCTGTGCATCATCCAAATAATGCA TTAGCTTTCCATGAATATAGGTTAATTTCAAAGTCAATAATATGTAACATCAACACATTTAGAG GTCAATACTTTTAAAGAATCAATTACTAACCATATTCAAAATAATATTCCATCAAACATAATAA ACATAACTGCAGTCTGCAAAGAATATTAATGTCTAGACCATCTTTTTTTAAGAAGAAAAAAAAA ACCTACGAGGATCTAGGTGACTTTTTTAATCAAGAATAAATAGGCACCCAATGAGGACTTGAGC TTTGGTAGCATTCAACAAGTTCCTCCCTTTTCATGCATCCATCTAATCAAACTAATCTACTGAG GAACAGTGACAACTTATTAAGAGATTAGCAACAAAGGCATCTCTAGTTATTTGTGTGAAACCAT CATAATATGCACAAGGAGTTTGTCAGCTTTTGTTAGAACATGTACAGAGTGCACACGTTACAAA GTATTATCTGTATGCAAAATAAAAAAAATGACCAGCTAACAAACAATTCATACCACCAAGTCTG GTTGAGGGGGGCACAGTTTTTTTTTGTACAGAAGGTGACACAGGAATGTTTCCTTTTCTTAAGC CATGTGAACAAAAAAAAAATGAATGTTCCTGTGTAGAACTGTTAAATGACTAATGAATGCTCCC AAGTCTTTTTGAAGGACATTGACAGAGTCTCCAAATCAAATATTTATTCACTGCCTTTTCTAAC CACAAATTCATAACTACATGAAAGCGTTCTTTCTCATGAAAACTAGTATATCATTTTCAGTTTT TCGCATCAAAGCGTTCGTTCTATCTCTTTTTTTTTGGCATATGTTAGGGAGTTAACATTTGAAG ATTTGACGATGACATCTATTTTGAGAATGGAGGAGCTGTTTGGAGTAAACTGCATTAAGATACA TGTTGCATGACACTGAAGCAGCTAGAGCATACACCACATATGTCATACCTTGGTTGCTGTTCAT GATGAAGAAAAGATGTAACCGAACAGGAACCAAAGTTAAATCGATAAAGAAAATAAATTTATTG TTCTATCTCTAATAGTTTCAGGAGATAAAATCCTGTGTGATGTCTCCACAACGAAAACTGATAT AGTGTGTACAACTAACCTTCTCCTGAAAACCAACAGCATCAGTGAACGCAACATCATTAGCATT ATTTTCCTCTTTATTCACCAAAGGACGACCGGATAAAACCTGAAACCAGTTAGGTGTAATTTGT GGAGTCAGCATAACATTTACTATTGGAACAATGGAAGGTATGACCAATTATCGGTCTCCTGACC TTTTTATCCCTTGACTGTCTAATATTTTCATCCTTCACGGAAGCAAAACTTCTAGCGATTTCAA TCAACTGCTGCAGCGATTCAGGAGAACTGGGCCTGATTGCAAGCTGCAAAATAGCATATGTGTA AGCCAAATAAAAGGTCATAAGACACTAGAATAAAACATCTGCAAAAAAAATGTCTTACTTTTGA TAAGGCATCAACAACATTATAAACCTCTGCGATGCTAATAGATTCTTGGGTAATCAATGTCTGG ACAAGTGATATAGCAAACTCGGTTGCAGCCTCTGAGGAACAGAAAAAGAGACATGAAAAACTCT CCAATGAGATGCAGCACATACAACAGATTCAAAATTGACTTTGTTTTATATTCAGTTTTTCCTG TATTTACTAATTGAAGGGATTCAACATTATGCTGTAACAGAAACAGTTTACAGGAATTGTTCTT CACAAAGATAAACTCGTCAACAATTCTCCAGACATTTAACATAGGACACAGACAGAAATTTATA ACATTTGGCCCATTGCATATATTGTGGACAGACATGCACATTAAAAACATTTGCTCCACTGCAC TTTCTTAAGAAAATTTTAAAACAAGTAACCATCATTCAGGTATTATAGATAGGTTAAAATGGGA GAAACAAAGGGGGTAGAATATGCCGCATTCCGTTTCCTAGGCTAAAAGCAGATGCGGCATAGGT CCCATTTTTCCATACTAGACACTAGAAATTATTGGGTCCAATGCCTGAATTACATGATTTACTC TGCTAATAACCAAATAGTTCGATTAGTGAAACTATGTTAGAAAAGAAAATCAATAACAAGTTGG CTCAGCAACATTTCAAATTCAATAATCTAAATCAAGTACTTCATCAACCTGAACATTGGATGCA GTATGCCAAATTATGGATAAGTTTCATCACATCCCTATTTGTTTCATCAATACAGGACATGCAA GCTGTTTTAACTGACAAACCAATAAACGGAATGCATGAAAACTTTTCACTTGCTACATGCTAGA ATAACACAGGTATATCTATGCCTGAATGCCAAACATACAACAATACCCAACTTAAACAAGAACT AGCTTTTCAAGTACTTTCTCAACTTACTGTTTCTTCCGCCATCAATAATCTTCGCCAAATGAAC ATTGTAATCCCCAAGATTAATCAGTTCAGACCGAATTAGTCCAATAATTATGTCGATGTTAAAC TTCTTATCTTCGTCAGAATATATTAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_008686 						
					
						PMCS
						0.104103519

Conservation Information
Conserved circRNAs	osi_circ_008686
PMCS	0.104103519

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							21891134-21888343(+)
21888582-21888270(-)
						
						Potential amino acid sequence
						
							MSMLNFLSSSEYITFTTSATSFEYESIEKYEIWSCCVGC*(+)
MGDSAYTHYIVKLQQDGLLKGDDLTDRFYHILTELAVAHSVVSEQVVAPGGISQQPTQQLQISY
FSIDSYSKLVALVVKVIYSDEDKKFNIDIIIGLIRSELINLGDYNVHLAKIIDGGRNKAATEFA
ISLVQTLITQESISIAEVYNVVDALSKLAIRPSSPESLQQLIEIARSFASVKDENIRQSRDKKV
LSGRPLVNKEENNANDVAFTDAVGFQEKVAVSFSEWCNICDHPTMGDSAYTHYIVKLQQDGLLK
GDDLTDRFYHILTELAVAHSVVSEQVVAPGGISQQPTQQLQISYFSIDSYSKLVALVVKVIYSD
EDKKFNIDIIIGLIRSELINLGDYNVHLAKIIDGGRNKAATEFAISLVQTLITQESISIAEVYN
VVDALSKLAIRPSSPESLQQLIEIARSFASVKDENIRQSRDKKVLSGRPLVNKEENNANDVAFT
DAVGFQEKVAVSFSEWCNICDHPTMGDSAYTHYIVKLQQDGLLKGDDLTDRFYHILTELAVAHS
VVSEQVVAPGGISQQPTQQLQISYFSIDSYSKLVALVVKVIYSDEDKKFNIDIIIGLIRSELIN
LGDYNVHLAKIIDGGRNKAATEFAISLVQTLITQESISIAEVYNVVDALSKLAIRPSSPESLQQ
LIEIARSFASVKDENIRQSRDKKVLSGRPLVNKEENNANDVAFTDAVGFQEKVAVSFSEWCNIC
DHPTMGDSAYTHYIVKLQQDGLLKGDDLTDRFYHILTELAVAHSVVSEQVVAPGGISQQPTQQL
QISYFSIDSYSKLVALVVK(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	21891134-21888343(+) 21888582-21888270(-)
Potential amino acid sequence	MSMLNFLSSSEYITFTTSATSFEYESIEKYEIWSCCVGC*(+) MGDSAYTHYIVKLQQDGLLKGDDLTDRFYHILTELAVAHSVVSEQVVAPGGISQQPTQQLQISY FSIDSYSKLVALVVKVIYSDEDKKFNIDIIIGLIRSELINLGDYNVHLAKIIDGGRNKAATEFA ISLVQTLITQESISIAEVYNVVDALSKLAIRPSSPESLQQLIEIARSFASVKDENIRQSRDKKV LSGRPLVNKEENNANDVAFTDAVGFQEKVAVSFSEWCNICDHPTMGDSAYTHYIVKLQQDGLLK GDDLTDRFYHILTELAVAHSVVSEQVVAPGGISQQPTQQLQISYFSIDSYSKLVALVVKVIYSD EDKKFNIDIIIGLIRSELINLGDYNVHLAKIIDGGRNKAATEFAISLVQTLITQESISIAEVYN VVDALSKLAIRPSSPESLQQLIEIARSFASVKDENIRQSRDKKVLSGRPLVNKEENNANDVAFT DAVGFQEKVAVSFSEWCNICDHPTMGDSAYTHYIVKLQQDGLLKGDDLTDRFYHILTELAVAHS VVSEQVVAPGGISQQPTQQLQISYFSIDSYSKLVALVVKVIYSDEDKKFNIDIIIGLIRSELIN LGDYNVHLAKIIDGGRNKAATEFAISLVQTLITQESISIAEVYNVVDALSKLAIRPSSPESLQQ LIEIARSFASVKDENIRQSRDKKVLSGRPLVNKEENNANDVAFTDAVGFQEKVAVSFSEWCNIC DHPTMGDSAYTHYIVKLQQDGLLKGDDLTDRFYHILTELAVAHSVVSEQVVAPGGISQQPTQQL QISYFSIDSYSKLVALVVK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os10g0556700_circ_g.5

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